Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1956 ATGGGAAAGAAGAAGAAGAGGGTTTCTTCGAAGGTCTGGTGTTACTACTGCGATCGGGAATTCGATGACGAAAAGATTTTGGTTCAGCATCAGAAAGCTAAGCACTTCAAATGCCATGTCTGCCATAAGAAGCTCTCCACTGCTGGCGGCATGGCCATTCACGTGCTCCAGGTCCACAAAGAAAGCGTCACAAAGGTGCCCAATGCAAAACCTGGCAGAGAGTCAACAGATATTGAAATATATGGAATGCAAGGGATTCCGCCAGATGTCTTGGCTGCTCATTATGGAGAGGAAGATGATGAAGTTCCATCAAAGGCAGCCAAAGTGGATATCCCACCAACTCAGCTTGTTGGTGGAGTGATTCCAGCACCATTAGGGGTGGGATATCCTCCTCAATCAACCTTGGGTGCAAGGCCACCTATTTATAATCCAGCTGTACCTGTGCCTCCAACAGCTTGGGCAGTTCCACCTCGACCTCAGCCTTGGTATCCACAACCTCCATCTGTCTCTATTCCGCCTCCTGCTCCATATGCACAGCAGCCATTGTTTCCTGTTCAGAATGTGAGGCCACCTCTACCATCAAATGCTTCTCCTGCACTTGCAACTTCTCAGATTACTCCTCCTGGGTTGCCGCCATCTTCATCTACTGTTCCAGTTTCACAACCTTTGTTTCCTGTTGTTAGCAATAACCACACGCCTACACAAACTTCAACATTTTCTGCCTCATCTCTATCTACCAGTGTTCCATCAATAACACCTGCCTTGTCTGCAAGTGTACCTGTTGATGCACATTCAGGTGCCAACACATCATTGATAAATAATTATCAAACGCTAGGAGTTCCAGGAGTTACATCAAGTAACTCGCATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCAATTGGACCACCCCCGGTAATTGCAAACAAAGCTCCTGTGTCTCAACCTGCCACTAATGAGGTTTATTTAGTTTGGGATGATGAGGCTATGTCCATGGAGGAAAGAAGAATGTCCTTGCCCAAATACCAGGTGCATGATGAAACTAGCCAGATGAGCTCCATTGATGCAGCCATAGACAAGAGGATACTTGAAAGCAGGCTAGCTGGTCGTATGGCATTTTAG 1125 0.4667 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPGRESTDIEIYGMQGIPPDVLAAHYGEEDDEVPSKAAKVDIPPTQLVGGVIPAPLGVGYPPQSTLGARPPIYNPAVPVPPTAWAVPPRPQPWYPQPPSVSIPPPAPYAQQPLFPVQNVRPPLPSNASPALATSQITPPGLPPSSSTVPVSQPLFPVVSNNHTPTQTSTFSASSLSTSVPSITPALSASVPVDAHSGANTSLINNYQTLGVPGVTSSNSHSYASGPNTGGPSIGPPPVIANKAPVSQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDETSQMSSIDAAIDKRILESRLAGRMAF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1956 374 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Glsi09g1956 374 Gene3D Classic Zinc Finger 1 66 - -
Glsi09g1956 374 SMART c2h2final6 12 35 IPR013087 -
Glsi09g1956 374 SMART c2h2final6 36 59 IPR013087 -
Glsi09g1956 374 CDD SUF4-like 13 92 - -
Glsi09g1956 374 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Glsi09g1956 374 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Glsi09g1956 374 PANTHER ZINC FINGER PROTEIN 207 1 374 - -
Glsi09g1956 374 MobiDBLite consensus disorder prediction 194 217 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1956 1 374 C2H2 Transcription Factor Family AT1G30970 62.564 4.82e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1956 None None None