Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1952 ATGCTTCATAGAGATGAGAAGAGCAAGAGGGGATCAAGGGAACGCAGCAACCCAGGAGAACTAGGCAGCGAAGGTTTCTGGCTGGTGGGTATGAAGATGCAGAGCCACCACCACGCTGTGGCTTTGAGGTTCCATGAGCAAATGGGGACTAAAAGAAAATACACTTCCATTCAGGCCCAAAGAGCTTGGCTTCCAAAGTTTCTGCTGCTGTGGATCATGCTGATGGCGCTCTTTAGTAGGTACATCTACAATGGTATGGATGCAGATAATAAAGTTAGGAGGAAAGAGGTACTGGTTAGCCTCTGTGAGCAAAGAGCCAGAATGTTGCAAGATCAATTCAGTGTTAGTGTTAATCATGTCCATGCCTTAGCAATTCTTGTTTCAACCTTCCATTACTACAGAAACCCATCTGCAATTGACAAGGAAACCTTTGCGGAGTATACAGCCAGGACAGCATTTGAGCGGCCATTACTGAATGGGGTGGCATATGCACAAAGGGTAGTTAACTCAGAAAGAGCAAACTTTGAGAGGCAACATGGATGGGTAATAAAGACAATGGAAAGAGAACCTTCCCCTCTTCGAGATGAGTATGCACCAGTGATATTCGCGCAAGAAACTCTCTCTTATCTCCAATCTCTTGATATGATGTCAGGGGAGGAGGACCGAGAAAACATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTGACTAGCCCATTCAGGCTGTTGGATTCTCATCATCTTGGTGTGGTGTTGACATTCCCTGTTTACAAATCTAAGCTCTCTTTGGAGCCAAGTGAGGAAGAACGCATTGAGGCAACTTCAGGATACGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGGCAACTTGCTGGTAACCAAGCAATTTTGGTGCATGTATATGATGTCACAAACTTTAGTAACCCGCTAATCATGTATGGTAACCAATATGAAGACGGTGATATATCTCTAGTACATAAAAGCAAGCTTGATTTTGGAGATCCATACAGGAAACATCAGATGATATGTAGGTATCATCAGAAGGCACCAACATCATGGACAGCACTTACCACGGCATTCCTATTCTTCGTGATTGGTTTATTAGTGGGATACATTTTATATGGTGCTGCAATTCATATTGTCAAAGTTGAGGATGATTTCCATGAAATGCAGGAACTGAAAGTTCGAGCAGAAGCAGCTGATGTTGCCAAATCCCAGTTTCTAGCAACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATCCTTGGAATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCAACTCAAAGTGATTATGCTCAGACTGCTCAAGCATGTGGAAAGGCACTGATAACATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAGTTGGAGTTAGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCTTTATTTTCCGAGAAGTCTAGACACAAGGGTTTAGAGTTGGCAGTCTTTGTTTCTGATAAGGTTCCCAATATTGTTATGGGGGATCCTGGGAGATTCAGACAAATAATAACGAATCTTGTTGGCAACTCTGTTAAATTCACTGAACAAGGACACATATTTGTTAAGGTCCATCTAGCTGAAAATAGAAATCCCACAATGAATGGAAAATCTGAGACTTATCTAAATGGAGGATCGGATGAAGTGGCTGGTTATCAGTTCAAAACTATTAGTGGATATGAAGCAGCTGATGAACGGAACACCTGGGATAATTTTAAGCAACTAATTCCTGATGACGAATTTTGCTTTGATGCTTCAAGTAAAAAGGTGACTACTCGTCAAGCTTCTGAGCAAGTCACTTTGATGGTCTGTGTGGAGGACACTGGAATTGGGATTCCTTTTTCTGCCCAGGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAATTATGGTGGAACTGGTATTGGCTTGAGCATCAGTAAATGTCTGGTTGAACTAATGGGTGGTCAAATAAACTTCATAAGCCGACCCCAGATTGGGAGCACATTTTCCTTTACTGCAGTTTTTGGAGCATGTAAGACAAATTCAATCAGTGATGTGAAGAAGCTTAATTTTGAAGATCTGCCTTCTAGTTTCAAAGGACAAAAAGCCATAGTAGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTACATACCATCTGAAGAGACTAGGGATAATAGTTAAAGTTGCAAATAGCATCAATAAGGCTGTTGCTTTATGTGGGAAAAATGGTCCTTTGACATCTGGAGTATTCCAGCCTGATATAATTTTGGTTGAGAAGGACTCGTGGATTTTTGGTGAGGATGGGAGCTTCAATGTATGGCAACTGGACTGGAAACAGAATGGGCATACCTGCAAGTTGCCTAAGATTATCCTTCTTGCAACCAATATTAGTAATGCAGAATTTGATAAAGCTAAGGCTGCAGGTTTTGCTGATACTGTGATCATGAAACCTCTGAGAGCCAGTAGGGTGGCTGCTTGTCTTCAGCAGGTTCTGGGGTTGGGGAAGAAGAGGCAGCAAGGAACGCCTAATGGTTCCACTTTTCTACGAAGCGTCCTTTGTGGAAAGAAAATTTTGGTGGTTGATGACAATAGGGTAAACCGGAGGGTTGCTGCAGGTGCATTAAAAAAGTTTGGAGCTGATGTAACGTGTGCTGAAAGTGGCAAAGCTGCGCTTGAAATGCTTCAGTTGCCTCACAATTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGACGGGTTTGAAGCAACACGCCGAATCCGAATTATGGAAAGCAAGGCAAATGAGCAGATGAATGGTGGATCCATTGAAGGAACTGCCAATAAAAGTGAGTGGCATATGCCAGTACTGGCCATGACAGCCGATGTAATTCATGCCACATACGATGAGTGCCTGAAATGTGGGATGGATGGATATGTCTCGAAGCCCTTTGAGGAAGAGAATCTCTATCAGGCAGTTGCGAAGTTTTTTGAATCCAAGCCCATCTCAGACTCATGA 3075 0.4283 MLHRDEKSKRGSRERSNPGELGSEGFWLVGMKMQSHHHAVALRFHEQMGTKRKYTSIQAQRAWLPKFLLLWIMLMALFSRYIYNGMDADNKVRRKEVLVSLCEQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDKETFAEYTARTAFERPLLNGVAYAQRVVNSERANFERQHGWVIKTMEREPSPLRDEYAPVIFAQETLSYLQSLDMMSGEEDRENILRARATGKAVLTSPFRLLDSHHLGVVLTFPVYKSKLSLEPSEEERIEATSGYVGGSFDVESLVENLLGQLAGNQAILVHVYDVTNFSNPLIMYGNQYEDGDISLVHKSKLDFGDPYRKHQMICRYHQKAPTSWTALTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQSDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPNIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLAENRNPTMNGKSETYLNGGSDEVAGYQFKTISGYEAADERNTWDNFKQLIPDDEFCFDASSKKVTTRQASEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQIGSTFSFTAVFGACKTNSISDVKKLNFEDLPSSFKGQKAIVVDGKPVRAAVTTYHLKRLGIIVKVANSINKAVALCGKNGPLTSGVFQPDIILVEKDSWIFGEDGSFNVWQLDWKQNGHTCKLPKIILLATNISNAEFDKAKAAGFADTVIMKPLRASRVAACLQQVLGLGKKRQQGTPNGSTFLRSVLCGKKILVVDDNRVNRRVAAGALKKFGADVTCAESGKAALEMLQLPHNFDACFMDIQMPEMDGFEATRRIRIMESKANEQMNGGSIEGTANKSEWHMPVLAMTADVIHATYDECLKCGMDGYVSKPFEEENLYQAVAKFFESKPISDS 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1952 1024 CDD HATPase_EvgS-ArcB-TorS-like 525 699 - -
Glsi09g1952 1024 ProSiteProfiles Response regulatory domain profile. 726 856 IPR001789 GO:0000160
Glsi09g1952 1024 SUPERFAMILY CheY-like 722 857 IPR011006 -
Glsi09g1952 1024 ProSiteProfiles CHASE domain profile. 135 347 IPR006189 -
Glsi09g1952 1024 Pfam His Kinase A (phospho-acceptor) domain 408 473 IPR003661 GO:0000155|GO:0007165
Glsi09g1952 1024 PRINTS Bacterial sensor protein C-terminal signature 661 679 IPR004358 GO:0016310|GO:0016772
Glsi09g1952 1024 PRINTS Bacterial sensor protein C-terminal signature 626 640 IPR004358 GO:0016310|GO:0016772
Glsi09g1952 1024 PRINTS Bacterial sensor protein C-terminal signature 644 654 IPR004358 GO:0016310|GO:0016772
Glsi09g1952 1024 PRINTS Bacterial sensor protein C-terminal signature 685 698 IPR004358 GO:0016310|GO:0016772
Glsi09g1952 1024 Pfam CHASE domain 138 318 IPR006189 -
Glsi09g1952 1024 Gene3D - 472 702 IPR036890 -
Glsi09g1952 1024 CDD REC_hyHK_CKI1_RcsC-like 882 1012 - -
Glsi09g1952 1024 PANTHER TWO-COMPONENT HISTIDINE KINASE 51 1013 - -
Glsi09g1952 1024 Gene3D - 875 1023 - -
Glsi09g1952 1024 Gene3D - 720 859 - -
Glsi09g1952 1024 SMART CHASE_2 135 320 IPR006189 -
Glsi09g1952 1024 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 462 696 IPR036890 -
Glsi09g1952 1024 Gene3D - 384 471 - -
Glsi09g1952 1024 FunFam Histidine kinase 4 380 471 - -
Glsi09g1952 1024 SMART HKATPase_4 520 701 IPR003594 -
Glsi09g1952 1024 CDD HisKA 408 469 IPR003661 GO:0000155|GO:0007165
Glsi09g1952 1024 FunFam Histidine kinase 4 139 354 - -
Glsi09g1952 1024 FunFam Histidine kinase 3 875 1020 - -
Glsi09g1952 1024 Gene3D CHASE domain 139 354 IPR042240 -
Glsi09g1952 1024 Pfam Response regulator receiver domain 882 1012 IPR001789 GO:0000160
Glsi09g1952 1024 ProSiteProfiles Histidine kinase domain profile. 415 701 IPR005467 -
Glsi09g1952 1024 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 394 474 IPR036097 GO:0000155|GO:0007165
Glsi09g1952 1024 SMART HisKA_10 408 473 IPR003661 GO:0000155|GO:0007165
Glsi09g1952 1024 Gene3D - 86 138 - -
Glsi09g1952 1024 SUPERFAMILY CheY-like 879 1016 IPR011006 -
Glsi09g1952 1024 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 520 698 IPR003594 -
Glsi09g1952 1024 ProSiteProfiles Response regulatory domain profile. 881 1016 IPR001789 GO:0000160
Glsi09g1952 1024 SMART REC_2 880 1012 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1952 Glsi-ChrGlsi09 23591801 23598744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1952 26 1024 Histidine Kinase Gene Family AT2G01830 70.273 0.0 1414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi09g1952 HATPase_c 9.3e-32 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g1329 05 62427950 62435276 Glsi09g1952 09 23591801 23598744 CCT
Glsi09g1952 09 23591801 23598744 Glsi09g1952 09 23591801 23598744 ECH