LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1946	ATGTTACCTCATATCATTCCAGATGTTTACGGATCAAACGCAAAAGACCCCGCCAATGCTGAAATAGGGAGATCTCACTTTGCTCATGCCCACCATCCCTTTCCCATCTTTTCTCTTGTTTCTTCTCCTTCTTCTTTCCAAATTTTCCTCTTTCAATTTCTCAATCTCACCAGGTGCATCAAGACCAAGCAGTACCAATATTTAATTCAGATGTATGGGAGAAAAGCATGCCAGCTAGTCAAAGAACTTGCAAGCGGGGAAAAGGGTCAGCTCACGGCATTCAATAGTGATCTATTCGAACAAGTAGTTGCAGAATGCAGTCAACATCATCTTGAGCTTCAGTCGTTGATTAGAAAGATTCAAGAAGAAGGATTGGATGTTCAAACAACTAGAAATTCGGACCACCATGGTGCACTTATCCACCATCTTTCTTTAGTTCGAAATAAACGTTGCCTCATGGCCTATGTGTATAATCGAGCTGAGATTATACAGAGTTTGGTATGGAAGATAGGACATGTGCTTCCTCAAGAAATTGAGGAGAAGCTTTGTCATTCGGAGGTAGAGTATTTTAAGAAGCATTCTGCGGCTTTGAAATCATATATGTCAAGAGTGCAACTTGATCTGACTGTGGATATGGTGCCGCCCAAAGATCCCTACATTCAAGTGAGGGTTCTCGATGATATTGGCGAAGGAATTGTGCTTAGTGATGATAAGACTGCCAATTTTGCCCGCCATTCAATGCACTTTCTGAAGAGAACCGACGCGGAGCAATTTATTTCACGGGGCTTAATGGAGGAGCTCACAGGTTGA	810	0.4235	MLPHIIPDVYGSNAKDPANAEIGRSHFAHAHHPFPIFSLVSSPSSFQIFLFQFLNLTRCIKTKQYQYLIQMYGRKACQLVKELASGEKGQLTAFNSDLFEQVVAECSQHHLELQSLIRKIQEEGLDVQTTRNSDHHGALIHHLSLVRNKRCLMAYVYNRAEIIQSLVWKIGHVLPQEIEEKLCHSEVEYFKKHSAALKSYMSRVQLDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFARHSMHFLKRTDAEQFISRGLMEELTG	269

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1946	269	Pfam	GINS complex protein	114	186	IPR021151	-
	Glsi09g1946	269	PANTHER	PARTNER OF SLD5	71	268	IPR005339	GO:0000811\|GO:0006260
	Glsi09g1946	269	CDD	GINS_A_psf1	73	202	IPR005339	GO:0000811\|GO:0006260
	Glsi09g1946	269	SUPERFAMILY	GINS helical bundle-like	71	216	IPR036224	-
	Glsi09g1946	269	CDD	GINS_B_Psf1	218	267	-	-
	Glsi09g1946	269	FunFam	DNA replication complex GINS protein PSF1	71	204	-	-
	Glsi09g1946	269	Gene3D	-	71	204	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1946	Glsi-ChrGlsi09	23488771	23492848	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1946	71	269	Core DNA Replication Machinery Family	AT1G80190	69.802	1.78e-103	298

Showing 1 to 1 of 1 entries