Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1942 ATGGGGAAACCCCATCTGGGTTTTGGGGTTTCATTCTTTTCTTGTCTTGTTTTCTTGCTTTCCGTGGTCCTCTTGGCTCGGTCTCAGGACGCAGAGGTGATGGGCACTCTCAAGAAGATGATCAATGGCTCTAGCACCCTCGAATGGTCAGACACAGATGTCTGCAAGTGGAGCCACGTTCAATGCAATTCGGAGAAACGAGTGACTGCAATTCAGATTGGGCACCAGAATCTCCAAGGCTCTCTCCCCAAGGACCTGGAGAAGTTGACAGAGCTACAGCGTTTCGAGTGCCAATCCAACAGTCTCACAGGGCCATTTCCGCAATTATCAAATTCCTTAGAGAGGCTGTTGATCTTCAACAACGGTTTCACCTCGATACCTCCCGATTTCTTCAAGGGGAAGTCGATGTTACAAGAAGTAAGAATCGACTATAACCCGTTTACTCAGTGGCAAATTCCCGACACTCTCAAGGAATGTATGGCCCTTCAGACATTCTCAGCTCAAAATGCTAGTTTATCCGGGGAAATCCCCAATTTTTTTGGCAAAGATGGTCCCTTACCAGGTTTGGTTAATTTGTCCCTCTGTTTTAATCAACTTGTTGGTGGGTTGCCTGCCAGCTTCTCGGGTAGTTCAATTGAGTATCTTTGGGTGAATGGGCAAAAGAGCAACTCTAAACTCAATGGTACACTTGCTGTGTTACAGAACATGACTTCTCTGAAACAAATTTGGGTTCATGGTAATGCATTTACAGGTCCTATCCCAGATTTTTCGCACCATGATCAACTTTTTGATGTGAGTTTAAGGGATAACCAGTTAACGGGTGTTGTTCCACCGTCTCTTATGGCTCTTCCGAGTTTGCAGGTTGTGAATTTAACCAACAATTATCTTGAAGGACCGCCTCCTAAGTTCAAATCAGGGGTTAGGGTCGATATGGCTGGAACAAACCAATTTTGCACAAACGAACCTGGTCAGCCATGTAGTTCTTTGGTGAATGCTTTATTGTCTGTGGCTGAACCTTTGGGTTATCCGTTAAAATTTGCCCAAAGTTGGAAGGGTAACGATCCATGTGCTGGTAATTGGATAGGGATTGTTTGCTCTGGTGGGAACATTTCGGTTGTTAATTTCCAGAACATGGGTCTGTCTGGCACTATTTCTCCAAGTTTTGCCAGCCTCACATCTCTAAGAAGATTGCTTCTTGCTAACAATGATCTCACAGGTACCATACCAAGTGAGCTTACAAGTATGCCTTCTTTGCAAGAGCTAGATGTTTCGAATAATCATTTATATGGTGTCGTACCATCCTTCCGAAAAGATGTGGATCTTAAATTAGGAGGGAATCCTGATATTGGAAAGGATCGACCTACTGCTCCACCAGGTGCTCCCGGCTCGGATTCTGGAGGTAATGATAAGAAACATAGTTCTTCTGCAGTCATTGCTAGCATTGTGGTGGGGGTTATTGTCATACTAGGTCTAGCGATTCTGTTATTCGTTCGTTTTGGTAGAAAACATAAGCATTCAGGCAAAGTTCAAAGTCCAAATGCAACGGTGGTACATCCTCAGCATTCTGGATACAGAAATGGTTTGAAGATCAGTGTTGCTGGTGCTAGTGCTAGTGGTGGAGAAGCTAATGCAGAGAGTTCCACAACAGGTAATGCAGCTGCTGATGTTCATGTGGTGGAAGCTGGTAGTATGGTAATTTCAATTCAAATTTTGAGAGAAGTTACCAACAATTTCAGTGAAGAAAACATATTGGGGAAGGGTGGTTTTGGCACTGTGTACAAAGGAGAATTGCATGATGGGACAAAGATCGCAGTGAAAAGAATGGAATCCGGAATGGTGGGTGAGAAGGGCCTGAGCGAGTTCAAGGCTGAAATTGCTGTACTTACAAAGGTTCGTCATAAACATTTGGTTGCACTCTTGGGGTATTGCTTGGATGGGAATGAGAGGCTTCTTGTGTATGAATACATGCCTCAAGGGACTCTTAGTATGCATTTGTTCAACTGGAAAGAGGAAGGGCTAAAACCACTGGAATGGACAAGAAGGCTTATCATTGCCTTGGATGTAGCTAGAGGTGTTGAATATCTTCATGGTTTGGCCCAGCAAATTTTTATTCATAGGGATCTCAAACCATCAAACATTCTGCTCGGAGATGATATGCGGGCTAAAGTGGCAGACTTTGGATTGGTTCGGCTTGCTCCAGAAGGAAAAGCCTCTTTTGAAACTAGACTTGCTGGAACTTTTGGATATCTGGCACCAGAGTATGCTGCAACTGGACGAGTTACAACAAAGGTTGATGTATATAGTTTCGGGGTGATTCTTATGGAAATGATAACAGGGAGGAGAGCACTTGATGATAGCCTCCCTGAAGAAAACATCCACCTCGTTACATGGTTCCGAAGAATGCTACTGAACAAGGATACATTCCGAAAGGCCATTGACCCTACCATGGATCTCGATGAGGAAGCCTTATCCGGTATCAGAACTGTTGCGGAGTTGGCTGGCCACTGCTGCTCAAGGGAGCCCTATCAACGCCCGGACATGGGCCACGCCGTGAATGTGCTATCGCCTCTTGTTGAGGTCTGGAAGCCTGCAGAAGCAAGTTCTGATGACTTTGCTGGGATTGACCTCGATATGACCTTACCACAAGCAGTAATAAGGTGGCAAGCTCTTGAAGGAATGAGCACCACGGGCATGGATGTAACTACCTCATCATCATCATTCCTTACTAGTGGAGATAATACACAGTCAAGCATAGCCACTCGGCCACCTGGGTTTGCTGATTCCTTTACATCTTCAGATGGACGATGA 2808 0.4494 MGKPHLGFGVSFFSCLVFLLSVVLLARSQDAEVMGTLKKMINGSSTLEWSDTDVCKWSHVQCNSEKRVTAIQIGHQNLQGSLPKDLEKLTELQRFECQSNSLTGPFPQLSNSLERLLIFNNGFTSIPPDFFKGKSMLQEVRIDYNPFTQWQIPDTLKECMALQTFSAQNASLSGEIPNFFGKDGPLPGLVNLSLCFNQLVGGLPASFSGSSIEYLWVNGQKSNSKLNGTLAVLQNMTSLKQIWVHGNAFTGPIPDFSHHDQLFDVSLRDNQLTGVVPPSLMALPSLQVVNLTNNYLEGPPPKFKSGVRVDMAGTNQFCTNEPGQPCSSLVNALLSVAEPLGYPLKFAQSWKGNDPCAGNWIGIVCSGGNISVVNFQNMGLSGTISPSFASLTSLRRLLLANNDLTGTIPSELTSMPSLQELDVSNNHLYGVVPSFRKDVDLKLGGNPDIGKDRPTAPPGAPGSDSGGNDKKHSSSAVIASIVVGVIVILGLAILLFVRFGRKHKHSGKVQSPNATVVHPQHSGYRNGLKISVAGASASGGEANAESSTTGNAAADVHVVEAGSMVISIQILREVTNNFSEENILGKGGFGTVYKGELHDGTKIAVKRMESGMVGEKGLSEFKAEIAVLTKVRHKHLVALLGYCLDGNERLLVYEYMPQGTLSMHLFNWKEEGLKPLEWTRRLIIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASFETRLAGTFGYLAPEYAATGRVTTKVDVYSFGVILMEMITGRRALDDSLPEENIHLVTWFRRMLLNKDTFRKAIDPTMDLDEEALSGIRTVAELAGHCCSREPYQRPDMGHAVNVLSPLVEVWKPAEASSDDFAGIDLDMTLPQAVIRWQALEGMSTTGMDVTTSSSSFLTSGDNTQSSIATRPPGFADSFTSSDGR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1942 935 SUPERFAMILY L domain-like 43 436 - -
Glsi09g1942 935 Gene3D Phosphorylase Kinase; domain 1 539 655 - -
Glsi09g1942 935 Gene3D Ribonuclease Inhibitor 27 324 IPR032675 -
Glsi09g1942 935 ProSiteProfiles Protein kinase domain profile. 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1942 935 CDD TM_EGFR-like 471 505 - -
Glsi09g1942 935 CDD STKc_IRAK 584 857 - -
Glsi09g1942 935 Pfam Leucine rich repeat N-terminal domain 331 366 IPR013210 -
Glsi09g1942 935 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Glsi09g1942 935 SUPERFAMILY Protein kinase-like (PK-like) 560 862 IPR011009 -
Glsi09g1942 935 MobiDBLite consensus disorder prediction 904 935 - -
Glsi09g1942 935 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Glsi09g1942 935 SMART serkin_6 578 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1942 935 Pfam Leucine Rich repeats (2 copies) 392 426 IPR025875 -
Glsi09g1942 935 FunFam receptor protein kinase TMK1 540 655 - -
Glsi09g1942 935 ProSitePatterns Protein kinases ATP-binding region signature. 584 606 IPR017441 GO:0005524
Glsi09g1942 935 SMART LRR_typ_2 283 305 IPR003591 -
Glsi09g1942 935 SMART LRR_typ_2 109 133 IPR003591 -
Glsi09g1942 935 SMART LRR_typ_2 391 414 IPR003591 -
Glsi09g1942 935 SMART LRR_typ_2 415 437 IPR003591 -
Glsi09g1942 935 SMART LRR_typ_2 186 209 IPR003591 -
Glsi09g1942 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 703 715 IPR008271 GO:0004672|GO:0006468
Glsi09g1942 935 MobiDBLite consensus disorder prediction 443 471 - -
Glsi09g1942 935 Pfam Protein kinase domain 579 852 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1942 935 FunFam receptor protein kinase TMK1 656 873 - -
Glsi09g1942 935 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Glsi09g1942 935 PANTHER OSJNBA0070M12.3 PROTEIN 12 935 - -
Glsi09g1942 935 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Glsi09g1942 935 Gene3D Transferase(Phosphotransferase) domain 1 656 871 - -
Glsi09g1942 935 FunFam Receptor-like kinase TMK4 28 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1942 Glsi-ChrGlsi09 23431172 23434929 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1942 68 860 Receptor kinase-like Gene Family AT5G07280 31.079 4.74e-84 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Glsi09g1942 Pkinase 3.1e-46 CL0016