Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1900 ATGGGAAAATTTGGGCTCAAAGACCTGGTTGGGACTATTACAGCGCAAAAAAGGGAATCAGCAAATGAAGCGAGTGGATTTGTGTTCAAAAACTGCACCATAACTGAGCAAGGAAAGGTCCCACTTGGTAGAGCTTTTAAAGCTTACGCGACCGTCACCATAGCCAATTCATTTCTATCAGATGTGGTCACTCCCAAGGGATGGGATGCTTGGAACAACGTTGGGCATGAAAAGAATCACGTTTGTGGAGGAGGGATGCAGTGGGCAGGAGCAGACAAATTGAAGCGTGTGCCGTGGATGAAGCGCTTAAATGGGGCTGAGGTTGAACAACTGTTGAATATCTCTTTTATTGATGAAGAAGGGTGGATTAAAAAACTACCAACTGAGGTCTCCATTTGA 399 0.4511 MGKFGLKDLVGTITAQKRESANEASGFVFKNCTITEQGKVPLGRAFKAYATVTIANSFLSDVVTPKGWDAWNNVGHEKNHVCGGGMQWAGADKLKRVPWMKRLNGAEVEQLLNISFIDEEGWIKKLPTEVSI 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1900 132 SUPERFAMILY Pectin lyase-like 8 129 IPR011050 -
Glsi09g1900 132 Gene3D - 5 132 IPR012334 -
Glsi09g1900 132 Pfam Pectinesterase 11 101 IPR000070 GO:0030599|GO:0042545
Glsi09g1900 132 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1900 Glsi-ChrGlsi09 21292604 21293088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1900 5 124 Carbohydrate Esterase AT1G05310 38.400 1.58e-23 92.0