Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1890 ATGGTTAAATCGGCTGAGAATGGTTCTAGGTCTGTGCCGCCTTTTCTGAATAAGTGTTACGAGATGGTGGACGATGAGTCCACGGACTCCGTCATATCTTGGAGCGGAAGCAATGACCGTTTTGTTATCTGGGACATGACTGAATTCTCCGTGCGTTTCCTTCCCAACTATTTCAAGCACAACAACTTCTCCAGCTTCATCAGGCAACTCAATATCTATGGATTCAAGAAAATTGATACAGATCGCTGGGAATTTGCCAACGACGGATTTATCCGTGGTCAAAAGCATCTGTTGAAGAATATATCAAGAAGGAAACATCCACATGTTCAAGACCAGCATAAAGCTCAGCAGCAAGACAACTGTGATGAACCATCCCAAGAAGTTGCAAATCATGGCCTATGGAAAGAAGTTGAGAATCTGAAAACCGATAAAAATGCAATCATGCAGCAGTTGGTTAAACTTAGGCTGCACCAGGAGTCTGCTGAAAACAAGTTGCTGCTCCTAAGGGATCGCCTTCAAGGAATGGAAAAGAATCAGCAGCAGATGTTATCATTCTTAGTCACTGCCATGCAAATCCCTGGGTTCATGGTTCATCTGCTGCAGCCCAAGGAAAATAATAGCCGTATGGCTGAAGCCGGGAATATATTGGAACAAAGTAAACAAGATGATAGAGCAATAGCTTCTAATGGGATGATAATAAAGTATAGACCACTCGTTGGTGAACATTTGAAACCTGTAGTTCCGTTATCTTCTGGTTCAGAAAAGCAACCAGAACCTGATCTCTATGCAGATGGGTTGGAAGACTCTTTTGTCAATTCTGACTTCTTGAAAGTGCTTATGGATGAAAAATTGTGCCCATTAGAAAATTATTCTCCATTTATTCTAGCAGATTTACCTGATGATGGTGCATGGGAGCAGCTTCTTTTGGGCAGACCTTCCTTTGGAAACATTGAAGATACAAATCTGGACGGTGAGGAGACCACTATACATGGAATGGAGATGGAACCTCCTATAGCTGAAATTCCAAATGAAAATTCTCAAAATTTTGAGTCATTGATTGAGGAAATGGAGAAAACTTAA 1080 0.4148 MVKSAENGSRSVPPFLNKCYEMVDDESTDSVISWSGSNDRFVIWDMTEFSVRFLPNYFKHNNFSSFIRQLNIYGFKKIDTDRWEFANDGFIRGQKHLLKNISRRKHPHVQDQHKAQQQDNCDEPSQEVANHGLWKEVENLKTDKNAIMQQLVKLRLHQESAENKLLLLRDRLQGMEKNQQQMLSFLVTAMQIPGFMVHLLQPKENNSRMAEAGNILEQSKQDDRAIASNGMIIKYRPLVGEHLKPVVPLSSGSEKQPEPDLYADGLEDSFVNSDFLKVLMDEKLCPLENYSPFILADLPDDGAWEQLLLGRPSFGNIEDTNLDGEETTIHGMEMEPPIAEIPNENSQNFESLIEEMEKT 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1890 359 FunFam Heat shock transcription factor 1 8 105 - -
Glsi09g1890 359 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g1890 359 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Glsi09g1890 359 Coils Coil 158 178 - -
Glsi09g1890 359 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g1890 359 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g1890 359 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g1890 359 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 221 IPR027725 -
Glsi09g1890 359 Gene3D - 7 105 IPR036388 -
Glsi09g1890 359 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi09g1890 359 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1890 Glsi-ChrGlsi09 20931734 20936354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1890 12 313 HSF AT1G67970 48.852 7.77e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi09g1890 HSF_DNA-bind 1.7e-30 CL0123