Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1886 ATGGTTTCAAGATCTTATTCAAATCTATTGGAGCTGGCATCTGGCGAGTCTCCATCATTTGGGTGCATGAACCGTGGGATTCCAAGGATTATGACTGTGGCTGGGTTGATTTCTGATGTTGATGATGACCCAGTGGAGAGTTTGAGCTCTGATCCCTCTTCTTCATCGGCCCATCGAGACCGAATCATAATCGTTGCTAATCAGCTCCCCATTAGGTCTCAGAGGAAGCCAGATGGTAATAGGAATTGGTTTTTCAATTGGGACGAGAATTCACTTCTCCTCCAATTGAAAGATGGGTTAGGGGATGATGATACTGAGGTTATTTATGTTGGGTGCCTTAAGGAAGAAATCCATCCAAATGAACAAGATGAGGTTTCACAGAACCTTCTTGAGAGCTTCAAATGTGTCCCAACTTTTCTCCCACCTGATTTATTTACCAGATACTATCATGGGTTTTGCAAGCAGCAGTTATGGCCACTCTTTCACTACATGCTGCCGCTGTCACCAGACCTTGGTGGTAGGTTCAATAGGTCACTCTGGCAAGCTTATGTGTCAGTCAATAAGATTTTTGCTGATAGGATTATGGAAGTGATTAACCCGGAAGATGATTATGTTTGGATACATGATTATCATCTTATGGTGTTGCCAACATTCTTGAGGAAGAGATTTAACAGAGTGAAACTCGGATTCTTCCTCCATAGCCCATTCCCTTCATCAGAAATTTATAAGACATTGCCTATTAGGGAAGAGCTCTTGAGAGCTCTCCTGAATTCAGATTTGATTGGGTTTCACACATTTGATTATGCGCGTCATTTCCTCTCCTGTTGTAGCCGGATGCTCGGTCTTACCTACGAATCAAAACGGGGTTATATTGGGCTTGAGTATTATGGTAGAACTGTTAGTATCAAGATCCTCCCTGTTGGTATACACATGGGTCAGCTTCAGTCAGTCTTGAGCCTCTCAAAGACAGAAGAAAAAGTGGCCGAGCTTATTAAACAGTTTTCGGATCGAGGCAGGATAATGTTACTTGGGGTGGATGACATGGATATATTTAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAACTTCTCCTTCAGCATCCAGAGTGTCAAGGGAAGGTTGTACTTGTTCAGATTGCTAATCCGGCCCGGGGGCGAGGAAAAGATGTGAAAGAAGTGCAAGCTGATACAAAGGCAACAGTGAAAAGGATTAATGAAACATTTGGGAAACCTGGGTATGATCCTGTCATTCTGATTGAAGAGCCACTCAAGTTTTATGAGAGAGTTGCCTACTATGTTGTTGCTGAGTGTTGTTTAGTCACTGCAGTTAGGGATGGAATGAATCTCATACCCTATGAATATATAATCAGTCGTCAAGGAAATGACAAATTGGATAAAGTTTTGGGACTAGCTTCCTCTCCTAAGAAAAGCATGCTAGTTGTCTCTGAGTTCATTGGCTGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCATGGAATATTGATGCAGTAGCAGATGCAATGGACTCTGCCCTGGAAATGGCTGATTCGGAGAAACAGCTTAGGCATGAGAAGCATTATAGATACGTAAGTACTCATGATGTAGGATACTGGGCCCGCAGCTTCTTGCAAGATTTGGAAAGGACTTGTAGTGATCATGTCCGGCGAAGGTGGTGGGGAATCGGGTTTGGATTAAGTTTTAGAGTTGTAGCACTTGATCCAAACTTCAGAAAGCTCTCAATGGAGCACATTGTTTCAGCTTACAAGCGCACAACAACTCGGGCAATCCTTTTAGATTATGATGGTACACTAATGCCTCAGGCTTCCATTGATAAGAGCCCAACTGCTAAGTCTATTGAAATTCTTAATAGCTTATGTAAAGATAAGAACAACATGGTGTTTCTTGTTAGTGCTAGAAGCCGGAAAACACTTGCTGAATGGTTTTCTCCTTGTGAGAATCTGGGAATTACAGCTGAGCATGGTTACTTTCTAAGATTAAAGCGAGATGCAGAATGGGAAACATGTGGACCTGCAACAGACTGTAGTTGGAAACAGATTGCTGAGCCTGTGATGAAGCTTTATACTGAAACAACCGATGGATCCACCATTGAAGATAAAGAGACTGCACTTGTCTGGTGCTATGAGGATGCAGATCCGGATTTTGGATCATGCCAAGCTAAGGAACTTCTTGATCATCTTGAAAGTGTGCTTGCAAATGAACCTGTTACTGTCAAGAGTGGCCAGAACATTGTAGAGGTTAAACCACAGGGTGTGAGCAAGGGGATTGTGGCCAAACGCCTACTTTTGAGCATGCGAGAAAATGGAATATTGCCTGATTTTGTTTTGTGCATAGGAGATGACCGGTCCGATGAAGACATGTTTGAGGTAATCTCGAGCTCCATGGCTGGTCCTACCATTGCACCCAAGGCTGAAGTATTTGCATGCACTGTTGGTCGAAAACCAAGCAAGGCCAAGTACTATCTGGATGATACAGCTGAAATAGTGAGATTGATGCAGGGTTTAGCTTCTGTTTCGGAACAAACAGTTCGATTCTAG 2562 0.4305 MVSRSYSNLLELASGESPSFGCMNRGIPRIMTVAGLISDVDDDPVESLSSDPSSSSAHRDRIIIVANQLPIRSQRKPDGNRNWFFNWDENSLLLQLKDGLGDDDTEVIYVGCLKEEIHPNEQDEVSQNLLESFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLSKTEEKVAELIKQFSDRGRIMLLGVDDMDIFKGISLKLLAMEQLLLQHPECQGKVVLVQIANPARGRGKDVKEVQADTKATVKRINETFGKPGYDPVILIEEPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNDKLDKVLGLASSPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPTAKSIEILNSLCKDKNNMVFLVSARSRKTLAEWFSPCENLGITAEHGYFLRLKRDAEWETCGPATDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGIVAKRLLLSMRENGILPDFVLCIGDDRSDEDMFEVISSSMAGPTIAPKAEVFACTVGRKPSKAKYYLDDTAEIVRLMQGLASVSEQTVRF 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1886 853 CDD GT20_TPS 61 549 IPR001830 GO:0003824|GO:0005992
Glsi09g1886 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 29 844 IPR001830 GO:0003824|GO:0005992
Glsi09g1886 853 FunFam Trehalose-6-phosphate synthase 10 726 852 - -
Glsi09g1886 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 595 712 - -
Glsi09g1886 853 FunFam Trehalose-6-phosphate synthase 2 679 758 - -
Glsi09g1886 853 Gene3D - 595 727 IPR023214 -
Glsi09g1886 853 Gene3D - 728 852 IPR023214 -
Glsi09g1886 853 FunFam Alpha,alpha-trehalose-phosphate synthase 317 533 - -
Glsi09g1886 853 Gene3D Glycogen Phosphorylase B; 317 533 - -
Glsi09g1886 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 552 - -
Glsi09g1886 853 Gene3D Glycogen Phosphorylase B; 53 316 - -
Glsi09g1886 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 54 315 - -
Glsi09g1886 853 NCBIfam trehalose-phosphatase 595 843 IPR003337 GO:0003824|GO:0005992
Glsi09g1886 853 CDD HAD_TPP 597 838 - -
Glsi09g1886 853 SUPERFAMILY HAD-like 596 843 IPR036412 -
Glsi09g1886 853 Pfam Glycosyltransferase family 20 61 549 IPR001830 GO:0003824|GO:0005992
Glsi09g1886 853 NCBIfam HAD-IIB family hydrolase 598 799 IPR006379 -
Glsi09g1886 853 Pfam Trehalose-phosphatase 599 833 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1886 Glsi-ChrGlsi09 20877846 20881252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1886 1 849 Trehalose Biosynthesis Gene Families AT1G68020 82.271 0.0 1478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1886 09 20877846 20881252 Glsi09g1886 09 20877846 20881252 ECH