Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1880 ATGAGGAAGCCTTGCTGTAATAAGCAAGATGTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTTATAGATTACGTCAATGAACATGGCGAGGGTTGCTGGCGAACCCTTCCTCAAACTGCTGGCTTACTTCGCTGCGGCAGAAGTTGTAGGCTGAGATGGATAAACTATCTAAGGCCAGAGCTTAAACGAGGCAACTTTGCTGAAGATGAAGAAGATCTAATCATCAAGCTTCATGCACTCCTAGGCAATCGGTGGTCATTGATAGCGGGAAGATTGCCTGGGCGAACCGATAACGAAGTGAAGAATTATTGGAACTCTCATCTAAGAAGAAAGCTCATAAACATGGGAATTGATCCAAATAATTACCGGTTAAGAAATCCACCAATAATGTATGGTAGCTCAGCATCATCTCATAGCCTTCAAGACAATGCCGAGAATAATGAGCCAACAAAACCATATGGTGACATGGAGGACAAGTCATTTTGCTTACCAGATTTGAACCGAGATCTCTCTATGAGCAATAATATTCCTTCTTCATCACCACCTCCTCCACGCCCTATCAATATTGCTCAAGAAAATCATATATAA 597 0.4221 MRKPCCNKQDVNKGAWSKQEDQKLIDYVNEHGEGCWRTLPQTAGLLRCGRSCRLRWINYLRPELKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNYRLRNPPIMYGSSASSHSLQDNAENNEPTKPYGDMEDKSFCLPDLNRDLSMSNNIPSSSPPPPRPINIAQENHI 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1880 198 MobiDBLite consensus disorder prediction 136 198 - -
Glsi09g1880 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Glsi09g1880 198 MobiDBLite consensus disorder prediction 136 151 - -
Glsi09g1880 198 SMART sant 65 113 IPR001005 -
Glsi09g1880 198 SMART sant 12 62 IPR001005 -
Glsi09g1880 198 CDD SANT 68 111 IPR001005 -
Glsi09g1880 198 FunFam MYB-related transcription factor 12 65 - -
Glsi09g1880 198 Gene3D - 67 152 - -
Glsi09g1880 198 CDD SANT 15 60 IPR001005 -
Glsi09g1880 198 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Glsi09g1880 198 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Glsi09g1880 198 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Glsi09g1880 198 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 150 - -
Glsi09g1880 198 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Glsi09g1880 198 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Glsi09g1880 198 Gene3D - 13 65 - -
Glsi09g1880 198 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Glsi09g1880 198 FunFam MYB transcription factor 67 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1880 Glsi-ChrGlsi09 20673602 20675018 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1880 2 138 MYB Transcription Factor Family AT4G38620 70.073 9.21e-73 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g1880 Myb_DNA-binding 5.4e-14 CL0123