Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1868 ATGGCTGCTTTGCGGAGAGTGACCCAGTCGAGTATGACTACTGGTGTAAGCAGCTATGGCTGCTGCAAAGGTGCTGCTGCTATTGAGAAGGCAATCCCCGAAAAATTCCCAGCTGGACTGAGGGTTCTCATTGTGGACGATGACCACACTACCTTGAGAATCATTGAACAAATGTCTATCAAATGTCATTATCGCGTTACCACATGTTCTGAGGCTACTACTGCTTTGAATCTTCTAAGAGAGAGGAAAGGCTGTTTTGATGTGGTATTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAACTCCTTGAACATGTTGGGCTGGAGATGGATCTTCCTGTTATTATGATGTCTGCTGATGGTAGAACAAGTGCTGTGTTGAAGGGAATTAGACATGGGGCTTGTGATTACTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAGCATGTTATTAGGAAAAAGTGGAATGAAAATAAAGAACATGAAAATTCTGGCAGCTTGGAAGATAATGATCGGAATAAACAAGGAAATGACGATGCTGAATATACTTCATCAGTAATTGATGCAGCAGAAGTAGTTAAGGTGCCAAAAAAGAGGAGCATTCTAAAAGAAGATGATGACGGTGAGCTGGAGAATGATGATCCATCCACATCTAAGAAGCCTCGTGTAGTCTGGTCCGTGGAACTGCATCAACAATTTGTCAGTGCTGTGAACCAACTCGGGCTTGACAAGGCTGTACCAAAGAGAATTCTAGAATTGATGAATGTGCCTGGTTTGACAAGAGAAAATGTAGCAAGTCATCTGCAGAAATTTAGGCTTTATTTGAAGAGACTAAGTGGAGTACCACAGCAACAGAATGGGATGCCAAACACAGTCTCTGGGTCTATAGAATCCAAGCTAGGGGGACTTGGAAGATTAGACATCCAAGCTCTGGCTGCTGCTGGCCAAGTGCCTCCTCAAACACTAGCTGCCCTTCATGCCGAACTCTTAGGTCATCCAGTCACTAATTTAGTGCCAACAGTGGGCCAGACTGCTCTTCTGCAAGCATCCATACCGGGGCCTAAGCATTCCCCTGCGGAACATGCTGCAGCATATGGATATGGAGCATGGCCGCCATCTGATACAATTCGTTCAGTGGGAACCAATACTAATCCTGGAAGGGTGAGTGGTCAGAATAATAACATGCTGATGAATATATTGCAGAACCAACAAAGGCAACAGCACCAGCAAACACAACAGCAAATGCAGCAGCAGCAGTCATTGATACATGATCAAAGTCGTTCAATCAATGTTCAACCATCTTGTTTGGTGGTTCCCTCTCAATCTTCAGGCACTTTCCAGGCTAATAGTCCTTCTCCTGTTAACCAGAATTGCAGCTTTGCTAGGAATGCCCTTGTTGATTATAGTCTCTTTTCACCTCAATCAAATAATTCTTCATTGAATATTGCTCAATTTCCTGGCGGGGACACCAAAGCCAGAAGTGTTCTTTGTGGCTATATGGCTCCAGGCTCCATATCACCTTCAACATTGTCTCCTTCAATAACTGCTAACAATAGTAATATCCAGCAGCTTCAAAACTCAACTTTGACATTTAGTGCTGTGAGACCTTTGCCAGCTCTTGCATCTACTGTGTCTGATACACAAGTTTCCTATGGTACGAAATCTGGCGATGCAATTGATCAATCATCTCTTAGGAATCTGGGATTCGTTGGCCAAGGAGGAGCCAAATATGGATTTAATAGATAA 1761 0.4355 MAALRRVTQSSMTTGVSSYGCCKGAAAIEKAIPEKFPAGLRVLIVDDDHTTLRIIEQMSIKCHYRVTTCSEATTALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVLKGIRHGACDYLIKPVREEELRNIWQHVIRKKWNENKEHENSGSLEDNDRNKQGNDDAEYTSSVIDAAEVVKVPKKRSILKEDDDGELENDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVPQQQNGMPNTVSGSIESKLGGLGRLDIQALAAAGQVPPQTLAALHAELLGHPVTNLVPTVGQTALLQASIPGPKHSPAEHAAAYGYGAWPPSDTIRSVGTNTNPGRVSGQNNNMLMNILQNQQRQQHQQTQQQMQQQQSLIHDQSRSINVQPSCLVVPSQSSGTFQANSPSPVNQNCSFARNALVDYSLFSPQSNNSSLNIAQFPGGDTKARSVLCGYMAPGSISPSTLSPSITANNSNIQQLQNSTLTFSAVRPLPALASTVSDTQVSYGTKSGDAIDQSSLRNLGFVGQGGAKYGFNR 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1868 586 Pfam Myb-like DNA-binding domain 227 275 IPR001005 -
Glsi09g1868 586 MobiDBLite consensus disorder prediction 165 183 - -
Glsi09g1868 586 NCBIfam myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Glsi09g1868 586 SUPERFAMILY CheY-like 39 166 IPR011006 -
Glsi09g1868 586 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 222 281 IPR017930 -
Glsi09g1868 586 Coils Coil 406 426 - -
Glsi09g1868 586 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Glsi09g1868 586 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
Glsi09g1868 586 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 415 IPR045279 GO:0009736
Glsi09g1868 586 CDD REC_typeB_ARR-like 42 156 - -
Glsi09g1868 586 FunFam Two-component response regulator 40 177 - -
Glsi09g1868 586 MobiDBLite consensus disorder prediction 165 185 - -
Glsi09g1868 586 Pfam Response regulator receiver domain 42 151 IPR001789 GO:0000160
Glsi09g1868 586 ProSiteProfiles Response regulatory domain profile. 41 156 IPR001789 GO:0000160
Glsi09g1868 586 SMART REC_2 40 152 IPR001789 GO:0000160
Glsi09g1868 586 PIRSF RR_ARR_type-B 22 573 IPR017053 GO:0003677|GO:0003700|GO:0009736
Glsi09g1868 586 FunFam Two-component response regulator 221 284 - -
Glsi09g1868 586 Gene3D - 40 217 - -
Glsi09g1868 586 Gene3D - 221 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1868 Glsi-ChrGlsi09 20294320 20301145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1868 75 338 Response Regulator Gene Family AT3G16857 56.738 6.81e-96 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi09g1868 Response_reg 1.1e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1868 09 20294320 20301145 Glsi09g1868 09 20294320 20301145 ECH