Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1865 ATGGCCATGGCGAAAAAGAAAGAAGATGAAGAGGGGGTTCAGAACGCGGGGAAGAGGCTGAAATGCACGAGGCATGAGGAAAAGGGTCAGACAGAGGAGGAAGCTGCGGATGAGGAAAGTGAGCTCCCAATCCAGCCAGGGCTCTTCTTCTACCCAACTATTCCCACATCCTTCGTTGTCTCAGATGCCCTTGAACCCGATTTTCCCGTCATCTATGTTAACAAGGTTTTTGAATTCGTCACGGGGTATCGTGCCGACGAGGTTCTGGGTCGGAACTGTCGGTTCTTACAATATAGGGACCCTCATGCTCAAAGGAGGCACCCTTTGGTGGATCCAGTTGTTGTTTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGCGAACTTCTGAATTTCAGGAAGGATGGTTTCCCTTTAGTGAACAGGCTGAGACTTGCGCCAATTCATGATGATGATGGAACTGTGACACACATAATAGGCATCCAGCTGTTTTCTGAAGCAAATATAGATCTAAACCATGTCTCGTATCCAGTATTCAAGGAGACTTGCGGTCAGGATTTTGATAAGACCGGTAAGTATTCTCTAAAGAGTGGACGAACATTATACAGCCATCACCAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCTCATAACATCTTATCACGCTTGACACCAAGGGATGTTGCATCCATTGGGTCTGTGTGCAGAAGGATCCGTCAGTTAACAAAGAATGAGCATGTTAGGAAGATGGTGTGTCAAAATGCATGGGGAAAAGAAGTGACGGGTACGTTGGAGCTGATGACCAAGAAATTAGGATGGGGTCGTCTGTCTCGGGAACTGACTACACTTGAGGCTGTTTGTTGGAGAAAACTGACGGTTGGAGGTGCAGTAGAGCCTTCACGCTGCAATTTCAGTGCTTGTGCAGCTGGAAATAGACTTGTACTGTTTGGAGGTGAAGGAGTTGATATGCAACCTATGGATGACACTTTTGTCCTAAATCTTGATGCTAAAAATCCCGAGTGGCGCAGGATTAGTGTGAAATCATCCCCGCCTGGAAGGTGGGGCCACACCCTCTCTTGCTTAAATGGTTCGTGGTTGGTGGTTTTTGGTGGATGTGGCAGGCAAGGATTGCTTAATGATGTGTTTGTTCTTGATTTGGATGCTCAACAGCCAACATGGAAGGAAGTCTGTGGTGGAACTCCACCTCTCCCTAGATCTTGGCACAGCTCTTGCACAATTGAAGGGTCTAAATTAGTTGTCTCAGGTGGGTGCACAGATGCTGGGGTACTTCTTAGTGACACATACTTATTGGACCTTACTACAGATAATCCAACATGGAGAGAGATTCCAATTTCTTGGACTCCTCCGTCTCGGTTGGGGCACTCACTCTCAGTATATGGTAGGACAAAGATTCTCATGTTTGGTGGACTTGCCAAGAGTGGACACTTACAGTTACGATCAGGGGAGGCTTATACGATTGATTTAGAAGATGAAAAGCCTCAGTGGAGGCAACTAGAATGTAGTGCATTCTCTGGGATAGGTGGTCAAAGTGCCGTGGTTCCTCCACCACGATTAGATCATGTTGCCATGAGCATGCCTTGTGGGAGGATTATTATTTTTGGTGGGTCCATTGCAGGGCTTCACTCTCCATCCCAGCTCTTTCTTTTGGACCCGTCCGAGGAGAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCACCGAAATTTGCTTGGGGTCATAGCACATGTGTGGTTGGAGGGACAAGGGTGTTGGTATTGGGTGGACACACTGGGGAGGAATGGTTACTAAATGAGTTGCATGAGTTATGCTTAGCAAGCAGGCAGGACTCTGACCTAAGATGA 1887 0.4711 MAMAKKKEDEEGVQNAGKRLKCTRHEEKGQTEEEAADEESELPIQPGLFFYPTIPTSFVVSDALEPDFPVIYVNKVFEFVTGYRADEVLGRNCRFLQYRDPHAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGFPLVNRLRLAPIHDDDGTVTHIIGIQLFSEANIDLNHVSYPVFKETCGQDFDKTGKYSLKSGRTLYSHHQEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLSRELTTLEAVCWRKLTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWRRISVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVCGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDNPTWREIPISWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLQLRSGEAYTIDLEDEKPQWRQLECSAFSGIGGQSAVVPPPRLDHVAMSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWLLNELHELCLASRQDSDLR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1865 628 Pfam PAS domain 64 164 IPR000014 -
Glsi09g1865 628 Gene3D - 202 301 - -
Glsi09g1865 628 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 38 621 - -
Glsi09g1865 628 Pfam F-box domain 214 251 IPR001810 GO:0005515
Glsi09g1865 628 Gene3D - 492 623 IPR015915 GO:0005515
Glsi09g1865 628 Gene3D - 367 491 IPR015915 GO:0005515
Glsi09g1865 628 SUPERFAMILY Kelch motif 294 513 IPR015915 GO:0005515
Glsi09g1865 628 Pfam Kelch motif 532 579 IPR011498 GO:0005515
Glsi09g1865 628 ProSiteProfiles PAS repeat profile. 70 101 IPR000014 -
Glsi09g1865 628 CDD F-box_AtADO-like 213 259 - -
Glsi09g1865 628 SUPERFAMILY PYP-like sensor domain (PAS domain) 65 165 IPR035965 -
Glsi09g1865 628 MobiDBLite consensus disorder prediction 1 31 - -
Glsi09g1865 628 CDD PAS 54 164 IPR000014 -
Glsi09g1865 628 FunFam Putative LOV domain-containing protein 491 623 - -
Glsi09g1865 628 FunFam Putative LOV domain-containing protein 285 490 - -
Glsi09g1865 628 Pfam Galactose oxidase, central domain 308 358 - -
Glsi09g1865 628 FunFam Adagio protein 1 47 176 - -
Glsi09g1865 628 Gene3D PAS domain 51 176 - -
Glsi09g1865 628 Pfam Galactose oxidase, central domain 373 420 - -
Glsi09g1865 628 Pfam Galactose oxidase, central domain 422 473 - -
Glsi09g1865 628 NCBIfam PAS domain S-box protein 70 164 IPR000014 -
Glsi09g1865 628 SUPERFAMILY F-box domain 208 288 IPR036047 GO:0005515
Glsi09g1865 628 SUPERFAMILY Kelch motif 526 616 IPR015915 GO:0005515
Glsi09g1865 628 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1865 Glsi-ChrGlsi09 20233980 20241466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1865 53 166 AGC Kinase Gene Family AT5G58140 42.105 1.48e-21 97.8