Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1861 ATGTCATCGGAAAATTTCTCCACGGAGGAAGTTGAGCCCCGCGCTCCGCTCCTTCGTTCTCGCCAGGGAACCTCCGATGCTGCGCGGACCCCCACCCTTGCGCTTCTTCTGGGCCGCGCCACCGGTCGCCGTGGTCCTTCCATGCTGGTTCGGGAGACGGCGGCGCGCGAGCTGGAGGAGCGCAGGGCTGATTGGGGTTACTCGAAGCCGGTGGTGGCGCTCGACATCACGTGGAACATGGCCTTCGTGGTGGTGTCGGTGGTGATGCTAATTTTTTCGGTCAACGAGAAGCCCAATACGCCGATCCGGTTCTGGATCTGCGGGTATGCGCTGCAGTGCTTGGTTCATGTGGTGCTTGTGTGGCTCGAGTATAGGAGGAGGAATGGAAGGGTTTCGCGGAGTCGTAGGGCTGAGGACGCGGATATTGAATCTGGTAACGTGGAAGATGTCAACGACAGTGAGGACGAGGATAATGGAGATGGGAGCTCAGTGAATCCCTCACGCTCTGGATTCACAAAACGATGTGAATCGGTGAATACCATGGTGTCATTCCTTTGGTGGATAGTTGGCTTTTATTGGGTGGTCTCAGGTGGTGATATCCTTCTGCAAGATGCTCCACGTTTGTATTGGTTGGCTGTTGTTTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTATGTTGTTGTTTGCCTTGCATCATTGCTATTCTCTATGCTGTTGCTGGACAGGAAGGTGCATCAGAAGCAGATCTCTGTATGCTTCCAAAATACAGATTTCGCATGTTAAACAATGAGGAAAAGCCTAGTGGGGGAGCTGGATCAATGGTTCCTGTAGAAACAAGCAGTGGATACCTTGCAAATGAACGAATACTTTTGCCTGAGGATGCGGAATGCTGTATATGTCTTACTTCATACGAGGATGGAACAGAACTCCATGCTTTACCCTGCAACCACCATTTCCATGCTACGTGCATTGTGAAATGGTTAAAAATGAATGCTACTTGTCCTCTCTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTGTGA 1083 0.5042 MSSENFSTEEVEPRAPLLRSRQGTSDAARTPTLALLLGRATGRRGPSMLVRETAARELEERRADWGYSKPVVALDITWNMAFVVVSVVMLIFSVNEKPNTPIRFWICGYALQCLVHVVLVWLEYRRRNGRVSRSRRAEDADIESGNVEDVNDSEDEDNGDGSSVNPSRSGFTKRCESVNTMVSFLWWIVGFYWVVSGGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLCMLPKYRFRMLNNEEKPSGGAGSMVPVETSSGYLANERILLPEDAECCICLTSYEDGTELHALPCNHHFHATCIVKWLKMNATCPLCKYNILKGNEQV 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1861 360 SMART ring_2 309 349 IPR001841 -
Glsi09g1861 360 MobiDBLite consensus disorder prediction 144 159 - -
Glsi09g1861 360 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Glsi09g1861 360 MobiDBLite consensus disorder prediction 1 27 - -
Glsi09g1861 360 Pfam Ring finger domain 308 350 IPR001841 -
Glsi09g1861 360 SUPERFAMILY RING/U-box 297 354 - -
Glsi09g1861 360 PANTHER TARGET OF ERK KINASE MPK-1 40 358 - -
Glsi09g1861 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 358 IPR013083 -
Glsi09g1861 360 CDD RING-H2_PA-TM-RING 308 350 - -
Glsi09g1861 360 FunFam E3 ubiquitin protein ligase RIE1 289 357 - -
Glsi09g1861 360 MobiDBLite consensus disorder prediction 142 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1861 Glsi-ChrGlsi09 20157947 20167657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1861 12 359 C3H Transcription Factor Family AT1G68070 70.402 0.0 509