Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1846 ATGGCGAAAAGGGATGAGGTCTCTGTGTTAACCCTTGGGGGAAAGGGTTCATCTCTCTCTTCCTCCTCTCTCTACGCCATTGCCAGTGGCCGTGCTCAACTGCGCATCGATTCATTTGCTCTCGATAGGCTCTCCTCAATCTCGTCCAAACAGCGATCCTCACCATCGTTGAAGCACATGATCATCGCCCCTGAGTTCCCAAACTTGGAGGATCGCAGGGCTTTCCTTGTTGTGCTTCTAAACAAGCTCCTCCTCTCTAATTCGCCTGGCATCCGTGCATTTCTTCCTAAACTCATTACGGAAAAGTTGAATTCGAAGTCCCAGGGTTTGGAATTCGAGGAGTTCAATGTGGCTGAGGACGAGCTGTCTGTGCTGAAGAATTCTTCGTCTACTTTGCTTGGGATTTCTGCAATTTTAGACCACCAATCAGCGGCGTTATCTACGCTTGCAAATGTTGTTGCTACGTTGTCATCTGGAAAACATTGCCGGCTCTTCGAAACCTCTAGCGGCCACAGATTGTGCTTCCTCCTGCGATTCCATTCTCCAATCATGGCAGACGTTGAGGCCGATGTTGCCCCAGGGCTGCCCAAGAAGAGAACGTTCAAGAAGTTTAGCTTCAGAGGCGTTGATTTGGACGCACTTCTGGACATGTCCACTGATGAGCTTGTCAAGCTCTTCCATGCCCGGGCTCGCAGAAGGTTTCAGAGAGGCCTGAAGAGAAAGCCAATGGCTTTGATTAAGAAACTGCGCAAGGCGAAAAGGGAGGCTCCACCAGGTGAAAAGCCAGAACCAGTTCGTACCCACCTGCGCAATATGATTATTGTGCCCGAGATGATTGGGAGCATAATTGGAGTATACAATGGCAAGACTTTCAACCAGGTTGAAATCAAACCTGAGATGATTGGCCATTACCTAGCAGAATTCTCAATTTCATACAAGCCTGTCAAGCATGGTAGACCTGGTATTGGTGCCACCCACTCGTCAAGGTTTATTCCTCTGAAGTGA 1005 0.4896 MAKRDEVSVLTLGGKGSSLSSSSLYAIASGRAQLRIDSFALDRLSSISSKQRSSPSLKHMIIAPEFPNLEDRRAFLVVLLNKLLLSNSPGIRAFLPKLITEKLNSKSQGLEFEEFNVAEDELSVLKNSSSTLLGISAILDHQSAALSTLANVVATLSSGKHCRLFETSSGHRLCFLLRFHSPIMADVEADVAPGLPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1846 334 ProSitePatterns Ribosomal protein S19 signature. 287 311 IPR020934 GO:0003723
Glsi09g1846 334 SUPERFAMILY Ribosomal protein S19 238 318 IPR023575 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 Gene3D 30s Ribosomal Protein S19; Chain A 193 334 IPR023575 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 FunFam 40S ribosomal protein S15 191 334 - -
Glsi09g1846 334 NCBIfam 30S ribosomal protein S19 201 334 IPR005713 GO:0003735|GO:0006412|GO:0015935
Glsi09g1846 334 PRINTS Ribosomal protein S19 family signature 267 286 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 PRINTS Ribosomal protein S19 family signature 299 314 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 PRINTS Ribosomal protein S19 family signature 287 299 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 195 334 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 Hamap 30S ribosomal protein S19 [rpsS]. 230 323 IPR002222 GO:0003735|GO:0005840|GO:0006412
Glsi09g1846 334 Pfam Ribosomal protein S19 232 317 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1846 Glsi-ChrGlsi09 19319000 19330476 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1846 184 334 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.755 9.39e-90 263