Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1835 ATGGGCGACGTGAAGGATAAGGTAAAGGATTTCATGAAGAAAGTCAACAACCCTTTCTCGTCCTCTGGTAAATTCAAGGGCCAAGGTAGAGTGTTAGGATCATCCTCATCTTCTGCATCTAGAGATTCTTCTCTTCTCGGCTCCACGTCGAATCCTGGTCCAAAACCAAGTCCAGCGCCAGCGGCGGCGAATCCTCAACCTTTGCCTAAGAAAACGGTGAATTCGGAGCCGATTAAAATAGGGCCGAGTAAGTCCAGTTCTGATCGCAAACCGGGAAGCGGGTTTGACCCTTTTGATTCTTTAGTCACTTCTTCGAAGAGATCTGAAAAGGGGTATTCATTGAATGTGTATGAATGTCCTATTTGTGGGCAATCGTTTAGGTCCGAAGAAGAGGTGTCTATACATGTGGATAGATGTCTGAGTAACCCAGTTGAGCGTGACGATGGAAATGGGGTTGCAGAATTGCCTGACAAGGAAGTTGAATCAAGAGGTGAATTGGAGATTTGCATTGGTACTTATATATCAGGGAAGCCATCAGAGGGTTCAGTTGAAGTTGTTCTCAAACTGTTGAAGAATATTGTAAAGGAACCAGAGAATGCAAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAGATAAAGGAGGCTATTGCTGAGGTTGCAGGGGGCATAGAGTTGCTGGGCTGTGTAGGATTTGAACTGAGGGAGGAGAATGGGGAGACTTGGGCAGTGATGGAAGTTCCTACGGAAGAACAAATAAAATTGATTAAGAAAGCAGGAGAATTACTAGAATCGCCACTACCGCAGGAACCTCAAAAGAGAGGCAATTTGGCATCTGGGACTTCTTCTGAGATTGACGGACCTACTGAACCTAAGAAGATCGACAGACAGGTAAAGGTCTTCTTCGCTGTACCAGAGAGCATCGCTGCTAAAATTGAGCTACCAGAATCTTTCTATAACCTTTCAATTGAGGAGGTGAAAAGAGAAGCCGAATTAAGGAGGAAGAAGATCGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAGGAAAAAGCTGCCAAGAGGAGATACAAAAAAACTATTATTCGAATTCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACGACTTCTTTATATAAGTTTGTCAGCTCTGCATTAAAAGAACCAAGTTTAGAATTTGAGCTAATGCATCCTGTACTTGTTCGACGGCGGGTTATCCCTAATTTTCCTAGACCAGGGGAGAATGCTAGAACACTAGAGGAAGAGGACCTGGTACCTTCATCTCTAGTTAAGTTCAAACCTCGTGAAACAGATTCTGTTGTTTTCACAGGTCTCAAAAACGAACTGCTGGAAATCAGTGAACCTCTCTCATAA 1401 0.4325 MGDVKDKVKDFMKKVNNPFSSSGKFKGQGRVLGSSSSSASRDSSLLGSTSNPGPKPSPAPAAANPQPLPKKTVNSEPIKIGPSKSSSDRKPGSGFDPFDSLVTSSKRSEKGYSLNVYECPICGQSFRSEEEVSIHVDRCLSNPVERDDGNGVAELPDKEVESRGELEICIGTYISGKPSEGSVEVVLKLLKNIVKEPENAKFRKIRLSNPKIKEAIAEVAGGIELLGCVGFELREENGETWAVMEVPTEEQIKLIKKAGELLESPLPQEPQKRGNLASGTSSEIDGPTEPKKIDRQVKVFFAVPESIAAKIELPESFYNLSIEEVKREAELRRKKIADSQLLIPKSLKEKQEKAAKRRYKKTIIRIQFPDGVVLQGVFNPWEPTTSLYKFVSSALKEPSLEFELMHPVLVRRRVIPNFPRPGENARTLEEEDLVPSSLVKFKPRETDSVVFTGLKNELLEISEPLS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1835 466 Gene3D - 351 444 - -
Glsi09g1835 466 Pfam PUB domain 180 255 IPR018997 -
Glsi09g1835 466 SUPERFAMILY PUG domain-like 179 265 IPR036339 -
Glsi09g1835 466 SMART PGNneu 181 248 - -
Glsi09g1835 466 MobiDBLite consensus disorder prediction 264 289 - -
Glsi09g1835 466 SUPERFAMILY Ubiquitin-like 329 441 IPR029071 -
Glsi09g1835 466 MobiDBLite consensus disorder prediction 15 52 - -
Glsi09g1835 466 CDD PUB 170 264 - -
Glsi09g1835 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 465 - -
Glsi09g1835 466 Gene3D - 175 264 - -
Glsi09g1835 466 ProSiteProfiles UBX domain profile. 357 441 IPR001012 GO:0005515
Glsi09g1835 466 MobiDBLite consensus disorder prediction 1 102 - -
Glsi09g1835 466 FunFam UBX domain-containing protein 6 351 442 - -
Glsi09g1835 466 Pfam UBX domain 358 415 IPR001012 GO:0005515
Glsi09g1835 466 Gene3D Classic Zinc Finger 113 144 - -
Glsi09g1835 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 147 IPR013087 -
Glsi09g1835 466 ProSiteProfiles Zinc finger CCHC NOA-type profile. 111 141 IPR034735 GO:0070530
Glsi09g1835 466 MobiDBLite consensus disorder prediction 271 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1835 Glsi-ChrGlsi09 18901365 18911142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1835 1 388 C2H2 Transcription Factor Family AT2G01650 56.566 4.89e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1835 UBX 2.6e-06 CL0072