Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1831 ATGGGCGACGTGAAGGATAAGGTAAAGGATTTCATGAAGAAAGTCAACGACCCTTTCTCGTCCTCTGGTAAATTCAAGGGCCAAGGTAGAGTGTTAGGATCATCCTCATCTTCTGCATCTAGAGATTCTTCTCTTCTCGGCTCCACGTCGAGTCCTGGTCCAAAACCAAGTCCAGCGCCAGCGGCGGCGAATCCTCAACCTTTGCCTAAGAAAACGGTGAATTCGGAGCCGATTAAAATAGGGCCGAGTAAGTCCAGTTCTGATCGCAAACCGGGAAGCGGGTTTGACCCTTTTGATTCTTTAGTCACTTCTTCGAAGAGATCTGAAAAGGGGTATTCATTGAATGTGTATGAATGTCCTATTTGTGGGCAATCGTTTAGGTCCGAAGAAGAGGTGTCTATACATGTGGATAGCTGTCTGAGTAACCCAGTTGAGCGTGACGATGGAAATGGGGTTGCAGAATTGCCTGACAAGGAAGTTGAATCAAGAGGTGAATTGGAGATTTGCATTGGTACTTATATATCAGGGAAGCCATCAGAGGGTTCAGTTGAAGTTGTTCTCAAACTGTTGAAGAATATTGTAAAGGAACCAGAGAATGCAAAGTTTAGGAAAATTAGGTTGAGTAATCCAAAGATAAAGGAGGCTATTGCTGAGGTTGCAGGGGGCATAGAGTTGCTGGGCTGTGTAGGATTTGAACTGAGGGAGGAGAATGGGGAGACTTGGGCAGTGATGGAAATAGACGGACCTACTGAACCTAAGAAGATCGACAGACAGGTAAAGGTCTTCTTCGCTGTACCAGAGAGCATCGCTGCTAAAATTGAGCTACCAGAATCTTTCTATAACCTTACAATTGAGGAGGTGAAAAGAGAAGCTGAATTAAGGAGGAAGAAGATCGCAGATTCTCAGCTTTTAATCCCCAAGTCACTTAAAGAAAAGCAGGAAAAAGCCGCCAAGAGGAGATACAAAAAAACTATTATTCGAATTCAGTTTCCAGATGGAGTGGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACGACTTCTTTATATAAGTTTGTCAGCTCTGCATTAAAAGAACCAAGTTTAGAATTTGAGCTAATGCATCCCGTACTTGTTCGACGGCGGGTTATCCCTAATTTTCCTAGAGCAGGGGAGAATGCTAGAACACTAGAGGAAGAGGACCTGGTACCTTCATCTCTAGTTAAGTTCAAACCTCGTGAAACAGATTCTGTTGTTTTCACAGGTCTCAAAAACGAACTGCTGGAAATCAGTGAACCTCTCTCATAA 1287 0.4367 MGDVKDKVKDFMKKVNDPFSSSGKFKGQGRVLGSSSSSASRDSSLLGSTSSPGPKPSPAPAAANPQPLPKKTVNSEPIKIGPSKSSSDRKPGSGFDPFDSLVTSSKRSEKGYSLNVYECPICGQSFRSEEEVSIHVDSCLSNPVERDDGNGVAELPDKEVESRGELEICIGTYISGKPSEGSVEVVLKLLKNIVKEPENAKFRKIRLSNPKIKEAIAEVAGGIELLGCVGFELREENGETWAVMEIDGPTEPKKIDRQVKVFFAVPESIAAKIELPESFYNLTIEEVKREAELRRKKIADSQLLIPKSLKEKQEKAAKRRYKKTIIRIQFPDGVVLQGVFNPWEPTTSLYKFVSSALKEPSLEFELMHPVLVRRRVIPNFPRAGENARTLEEEDLVPSSLVKFKPRETDSVVFTGLKNELLEISEPLS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1831 428 MobiDBLite consensus disorder prediction 21 52 - -
Glsi09g1831 428 Gene3D - 313 406 - -
Glsi09g1831 428 SUPERFAMILY Ubiquitin-like 291 403 IPR029071 -
Glsi09g1831 428 Gene3D Classic Zinc Finger 113 144 - -
Glsi09g1831 428 CDD PUB 170 247 - -
Glsi09g1831 428 Pfam PUB domain 180 245 IPR018997 -
Glsi09g1831 428 SUPERFAMILY PUG domain-like 179 247 IPR036339 -
Glsi09g1831 428 FunFam UBX domain-containing protein 6 313 404 - -
Glsi09g1831 428 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 248 427 - -
Glsi09g1831 428 Gene3D - 176 256 - -
Glsi09g1831 428 SMART PGNneu 181 245 - -
Glsi09g1831 428 ProSiteProfiles Zinc finger CCHC NOA-type profile. 111 141 IPR034735 GO:0070530
Glsi09g1831 428 MobiDBLite consensus disorder prediction 1 102 - -
Glsi09g1831 428 SMART c2hc_5 116 140 IPR006642 GO:0003677|GO:0006281
Glsi09g1831 428 ProSiteProfiles UBX domain profile. 319 403 IPR001012 GO:0005515
Glsi09g1831 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 117 147 IPR013087 -
Glsi09g1831 428 Pfam UBX domain 320 377 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1831 Glsi-ChrGlsi09 18856445 18865593 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1831 1 350 C2H2 Transcription Factor Family AT2G01650 53.866 4.41e-133 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1831 UBX 1.9e-06 CL0072