Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1830 ATGGAGAGAGATTTCATGGGTCTGAGCTCAAAAGAATCATTAGCGGTGGTGAAGGAGGAGATTAACAATGATGGGTGCAAAGATTCAGGTTTCGCCAAGGGTTCAGTTGTACAATGGCCCTTCTCCAACAAAGTCTCTGCTCTTCCGCATTTGATGTCTTTTAAGGTTTCTCAAGATGACAAGCCTAAGAAGATGGTGTCTGATTCCATCACATCTGCTGGGTTTATGTCTATCTCAAGTCCAGATGCATTTGAGGCTAGTCAGAAACGCTCTGCTGCTGAAATCCAGAAATCTTTCAATCACGATGGGCAAGGTGGCTTTCATTTTTCCCTGACTCCGTATCCTGTACAACATGATGTGCATTCTCTGAATCGTCCTCATGATGTGAAGATGTTTTCAGTTCCCAATCAAGCAATTTCAGTTTCCATGGGGCACCCATTCTTGAAGAACCATTTTGCCATTGCGGGTCAGAATATTACCGGTGCTAATGTGATTCAACAGCCTCTTGGGGGTATACCAATTACTTTGCCTCATTCAGTCCCTCCCACCGTTGGTTCTATTGCTGGAATCACTGAATCGTGTGTGAAGCCATCTACACCTTCTCCTCAACTTACCATCTTCTATGCGGGTACTGTGAATGTCTTTGATGATATCACTCCTGAGAAGGCACAAGCTATCATGTTGTTGGCTGGGAATGGGTTATCGTTGGCTTCTAACAAGGCACAGCCGAAAGTTCAGCCACTGAACTCGAAATTGGCTGCAGGTGAAGGTGTACCTGCAAGTCAACCCCTGAATACATCTCCCTGCTCTGGTCTTTCAAGTCCTTTATCTGTTTCTTCACATACTGGTGCACAGTCAGGGAGTGGCTCAACTAGCACTGATGAGTTTCTGGCAGCTAAAACAACCGGAGTTCCCACCACTCCTGTTAGCAAAGTGGAGCCTCCTAAAGTAGTCAATGCAACCACTATGTTGCCTTCTGCTGTACCACAGGCTCGCAAAGCATCCTTGGCTCGGTTTTTGGAGAAGCGCAAGGAAAGGGTGATGAATGCAGCACCATATAACCTCAACAAGAAATCTGAGGAGTGTGCCACTGCAGAATACAATGGTGCTAACTTCTGCGCAGGCACTCCTGCTGTTTCTGATATTCTACCAGCCAAGTAA 1161 0.4608 MERDFMGLSSKESLAVVKEEINNDGCKDSGFAKGSVVQWPFSNKVSALPHLMSFKVSQDDKPKKMVSDSITSAGFMSISSPDAFEASQKRSAAEIQKSFNHDGQGGFHFSLTPYPVQHDVHSLNRPHDVKMFSVPNQAISVSMGHPFLKNHFAIAGQNITGANVIQQPLGGIPITLPHSVPPTVGSIAGITESCVKPSTPSPQLTIFYAGTVNVFDDITPEKAQAIMLLAGNGLSLASNKAQPKVQPLNSKLAAGEGVPASQPLNTSPCSGLSSPLSVSSHTGAQSGSGSTSTDEFLAAKTTGVPTTPVSKVEPPKVVNATTMLPSAVPQARKASLARFLEKRKERVMNAAPYNLNKKSEECATAEYNGANFCAGTPAVSDILPAK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1830 386 Pfam Jas motif 329 353 IPR018467 -
Glsi09g1830 386 MobiDBLite consensus disorder prediction 260 295 - -
Glsi09g1830 386 Pfam tify domain 201 231 IPR010399 -
Glsi09g1830 386 SMART tify_2 197 232 IPR010399 -
Glsi09g1830 386 ProSiteProfiles Tify domain profile. 197 232 IPR010399 -
Glsi09g1830 386 MobiDBLite consensus disorder prediction 253 295 - -
Glsi09g1830 386 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 95 364 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1830 Glsi-ChrGlsi09 18815302 18818855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1830 37 362 Tify Gene Family AT3G17860 36.257 4.66e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Glsi09g1830 tify 1.4e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1830 09 18815302 18818855 Glsi09g1830 09 18815302 18818855 ECH