Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1797 ATGAGCCCTACCCTTGCCAATTCTTTTGTCACTCATAAGCAATCTGAAAGAGAATCCTCTCATAATATTTCTAGCAAGCTACTAGCAATTTTGGTAGCAAAACAGCTTGGTCTATTTTCATTTCAATATAAGAATATGGACAAGCTTGTCTTGAATTATTGCATTGCTTACGCCTTTCTCATTTACTCTCTCAAGGTTTTGCATAGTGAAGCTTCGTTTTCATGCCTCCATACCCCATACCCTCGTGTGTGCAAGCATTACCTAGGCACCACCACCACCAACACACTATCAACTTCTTCTTCCTTCCATGACATGGCCCTTAAGGTCACCATGGACCAAGCCATTGAGGCTCACAAGCTTGTCTCAACCATGGAACTCAAAAATAACTTCAAAGACAAACGAGCCATTTCTGCATGGAGTGATTGCTTAGAGCTCTATGAAGACACAGTTTATCACCTCAATCGCTCCATAAGCTCGAAAAACCCAAACGATAAACTGACGTGGCTAAGTGCCTCCATAGCCAACCACCAAACTTGCCAAAATGGTTTCATCGACTTTAACCTTCCTTCCCACTTAAACTTCTTCCCAGCAATGCTTAGCAACTTCTCCAAATTGCTCAGCAATTCCCTAGCTATCAGCAACGCTCTGGCAGCCTCGTCATCGTCATTTTCATTTTCATCTTCATCGTTATCGACAGAACAAGTTGGTAATGGGACTAAGAGAAAGTTGTTGTTCTCCGATCACGGCTTCCCCAAATGGCTATCGGGTTCGGACCGAAGGAAACTGCTCCAGGCAGGTTCAAAAGCCGATGTTGTGGTGGCCAAAGATATGAGTGGGAACTATAAGACCATATCAGAGGGTGTGGCTGCAGCTGCAAAAATAAGCAAGGGGGGAAGCAGAAGAGTTATTGTGCAAGTTAAAGCAGGTGTGTATGAAGAGAACGTTGAGATTAAGAGGAACATGAAAAACTTGATGATCATTGGAGATGGCATTGATGCTACTATTGTTAGGAGTAGCAAGGATGCTCAAGAAACCACGACTTTTCGCTCAGCCACTTTTGCTGTTTCTGGTGACAACTTCATAGCCCAAGACATAACCTTCGAGAACACCGCCGGACCACAGAGTCACCAGGCGGTGGCTCTCCGGTCTGGCGCGGACCACTCGGTTTTCTACCGTTGCAGCTTCAAGGGTTACCAAGACACCTTATACGTCTACTCCCAGCGCCAGTTCTACCGTGACTGTGACATATACGGCACCGTCGACTTCATCTTCGGCGACGCTACTGCCGTTCTTCAGAACTGCAACATCTACGTGAGAAAGCCGATGAGCAACCAGCGGAACACAGTGACGGCGCAGGCGAGATCCGACCCAAATGAGAACACGGGCATTATCCTCCAAGGTTGCCGTGTCACCGCCTCGTCGGACTTGAAACCGGTGCAGAGTTCGTTCAAGACCTTTCTGGGCCGGCCATGGAAGCAGTACTCGAGGACGGTGGTGATGAAGAGCAATCTGGACTCTGTAATTGACCCTGCCGGGTGGTCGCCGTGGAGCGGTAATTTTGCTCTCAGCACTCTCTATTATGGCGAGTTTATGAATACTGGACCTGGTGCTGCCACTGGTGGGAGGGTGAAATGGCCAGGGTTTCATGTCATTACTAATCCATCAGAGGCTGGGAAGTTCACAGTTGGGAATTTCCTCGCCGGAGATTCGTGGATTCCTAGCACTGGCGTGCCATTTGATGCCGGCTTGTAA 1752 0.4783 MSPTLANSFVTHKQSERESSHNISSKLLAILVAKQLGLFSFQYKNMDKLVLNYCIAYAFLIYSLKVLHSEASFSCLHTPYPRVCKHYLGTTTTNTLSTSSSFHDMALKVTMDQAIEAHKLVSTMELKNNFKDKRAISAWSDCLELYEDTVYHLNRSISSKNPNDKLTWLSASIANHQTCQNGFIDFNLPSHLNFFPAMLSNFSKLLSNSLAISNALAASSSSFSFSSSSLSTEQVGNGTKRKLLFSDHGFPKWLSGSDRRKLLQAGSKADVVVAKDMSGNYKTISEGVAAAAKISKGGSRRVIVQVKAGVYEENVEIKRNMKNLMIIGDGIDATIVRSSKDAQETTTFRSATFAVSGDNFIAQDITFENTAGPQSHQAVALRSGADHSVFYRCSFKGYQDTLYVYSQRQFYRDCDIYGTVDFIFGDATAVLQNCNIYVRKPMSNQRNTVTAQARSDPNENTGIILQGCRVTASSDLKPVQSSFKTFLGRPWKQYSRTVVMKSNLDSVIDPAGWSPWSGNFALSTLYYGEFMNTGPGAATGGRVKWPGFHVITNPSEAGKFTVGNFLAGDSWIPSTGVPFDAGL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1797 583 SMART PMEI_2 66 212 IPR006501 GO:0004857
Glsi09g1797 583 Pfam Pectinesterase 270 569 IPR000070 GO:0030599|GO:0042545
Glsi09g1797 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 216 IPR035513 -
Glsi09g1797 583 Pfam Plant invertase/pectin methylesterase inhibitor 74 212 IPR006501 GO:0004857
Glsi09g1797 583 NCBIfam pectinesterase inhibitor domain 71 216 IPR006501 GO:0004857
Glsi09g1797 583 CDD PMEI-like_3 74 214 - -
Glsi09g1797 583 SUPERFAMILY Pectin lyase-like 266 582 IPR011050 -
Glsi09g1797 583 ProSitePatterns Pectinesterase signature 2. 416 425 IPR033131 -
Glsi09g1797 583 Gene3D - 265 583 IPR012334 -
Glsi09g1797 583 PANTHER PECTINESTERASE 62 573 - -
Glsi09g1797 583 FunFam Pectinesterase 72 216 - -
Glsi09g1797 583 FunFam Pectinesterase 264 583 - -
Glsi09g1797 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 69 217 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1797 Glsi-ChrGlsi09 18042777 18047192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1797 60 583 Carbohydrate Esterase AT1G23200 54.396 0.0 566