LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1792	ATGACCAAATCTAAAAGTTTTCTTCACAATATTATGAAACCCTTCAAATTCGGTTCTAGTAAAGAGGGAAGCAACGAAGAAGACTTGGAGAGAATTGCTGCCCAGGAGCAGAAGATTTTTCTTTATGAAACGTTGGTTGCCGCTACGAAAAATTTTCATCCTCATCATAAGCTTGGTGAGGGAGGCTTTGGACCCGTTTACAAGGGGAAGTTGGATGATGGAAGAGAGATTGCAGTGAAGCAATTATCACAAAGCTCAAATCAAGGGAACAAGGAGTTCAAGAATGAGGCCAAGTTGTTGGCTCGTGTGCAGCACCGGAATGTGGTGAATTTGCTGGGTTATTGCGTCCATGGCACAGAGAAGCTACTTGTGTATGAGTATGTTCCTCATGAGAGCCTTGATAAACTTCTATTCAAATCTCAAAAGAGAGAGCAGCTAGATTGGAAACGGAGGTTTGACATAATCGCAGGCATAGCAAGGGGGTTGCTTTACCTTCACGAAGACTCGCACAATTGCATCATCCATCGTGACATCAAGGCTAGCAACATCTTGCTTGATGAAAAATGGATCCCCAAGATTGCAGACTTTGGCATGGCTCGCCTCTTCCCTGAAGATCAAACCCATGTCAATACACGTGTGGCTGGCACCAATGGCTATATGGCTCCAGAGTACGTGATGCATGGACATCTCTCAGTGAGAGCGGATGTATTCAGCTATGGCGTTTTGGTGCTGGAGCTGATAAGTGGGCAAAGAAACTCAACGTTTAGCCTTCAGGCGGAAGCAAGTAGTCTGCTTGATTGGGCATACAAACTTTACAAGAAAGGGAGGAGTTTAGAAATTGTGGACCCTGCATTAGCAGATTCAGCAGTAACAGACCAAATAGCAATGTGCATACAAATAGGCCTGCTATGCACTCAAGGGGATCCGCAGCTCCGGCCGACCATGCGCCGGGTGGTGGTGATGCTGTCGAAGAAGCCGGGCCACATGGAAGAGCCAACAAGACCAGGAATGCCTGGTTCTAGATACCGAAGATCTCGCAGGCCCTCTGCTTTGTCTTCCACGGCTGGTACTTCTGGTGGTGGTATCGATTCTGATACACGTACTTCAGATTCAAGCATTAACTATACTACCACTGCCACGGGAGGAACAAGCTCCGCTGCTACAGATAATATAGACCAACGTGGAAAACGTCCCATGCAAGGTTAA	1206	0.4668	MTKSKSFLHNIMKPFKFGSSKEGSNEEDLERIAAQEQKIFLYETLVAATKNFHPHHKLGEGGFGPVYKGKLDDGREIAVKQLSQSSNQGNKEFKNEAKLLARVQHRNVVNLLGYCVHGTEKLLVYEYVPHESLDKLLFKSQKREQLDWKRRFDIIAGIARGLLYLHEDSHNCIIHRDIKASNILLDEKWIPKIADFGMARLFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVRADVFSYGVLVLELISGQRNSTFSLQAEASSLLDWAYKLYKKGRSLEIVDPALADSAVTDQIAMCIQIGLLCTQGDPQLRPTMRRVVVMLSKKPGHMEEPTRPGMPGSRYRRSRRPSALSSTAGTSGGGIDSDTRTSDSSINYTTTATGGTSSAATDNIDQRGKRPMQG	401

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1792	401	MobiDBLite	consensus disorder prediction	346	391	-	-
	Glsi09g1792	401	MobiDBLite	consensus disorder prediction	322	401	-	-
	Glsi09g1792	401	ProSiteProfiles	Protein kinase domain profile.	52	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g1792	401	FunFam	Cysteine-rich receptor-like protein kinase 10	129	334	-	-
	Glsi09g1792	401	Gene3D	Transferase(Phosphotransferase) domain 1	128	333	-	-
	Glsi09g1792	401	SMART	serkin_6	52	322	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi09g1792	401	Gene3D	Phosphorylase Kinase; domain 1	16	127	-	-
	Glsi09g1792	401	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	173	185	IPR008271	GO:0004672\|GO:0006468
	Glsi09g1792	401	CDD	STKc_IRAK	58	324	-	-
	Glsi09g1792	401	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	26	374	-	-
	Glsi09g1792	401	FunFam	Cysteine-rich receptor-like protein kinase 10	16	127	-	-
	Glsi09g1792	401	Pfam	Protein tyrosine and serine/threonine kinase	55	321	IPR001245	GO:0004672\|GO:0006468
	Glsi09g1792	401	SUPERFAMILY	Protein kinase-like (PK-like)	37	335	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1792	Glsi-ChrGlsi09	17947860	17952412	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1792	40	337	Receptor kinase-like Gene Family	AT4G11530	52.667	1.05e-111	340

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Glsi09g1792		PK_Tyr_Ser-Thr	1.1e-49	CL0016