Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1727 ATGGACAATATTCTGGGTCTCCTCAAACTTCGTATCAAGCGAGGTATTGCTCTCGCAATTCGCGATACTCGTAGCAGTGATCCTTATGTCGTTGTCACCATGGGCGACCAGAAATTAAAGACTCGTGTCGTGAAAAATAACCGCAATCCACAGTGGGATGAGGATTTGACACTTTCTATTAACGATGTTAACACTCCAATTCATCTGCAAGTTTATGACAAAGACACTTTTACTCTGGATGACAAAATGGGGGATGCGTATATAGACATAAAGCCATTACTTCAGTGTGTGAAGAATAAGATGGACTTGACCAATCTCCCAAATGGCTGTGTAGTCAAGAGAGTTCAACCAGATGGGAACAACTATCTCTTTGAAGAAAGCAGCTGCATATGGAACAACGGAAAACTCACCCAAGAAATGACTCTCTCATTGAGAAATGTAGAGTGCGGTGATTTAGTAGTGGAAATTGAATGGAAGGAAATTCCAGGTTGCAAGGGCTTATCAGGAGTTGAACTCTAA 519 0.4162 MDNILGLLKLRIKRGIALAIRDTRSSDPYVVVTMGDQKLKTRVVKNNRNPQWDEDLTLSINDVNTPIHLQVYDKDTFTLDDKMGDAYIDIKPLLQCVKNKMDLTNLPNGCVVKRVQPDGNNYLFEESSCIWNNGKLTQEMTLSLRNVECGDLVVEIEWKEIPGCKGLSGVEL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1727 172 SMART C2_3c 7 102 IPR000008 -
Glsi09g1727 172 Gene3D C2 domain 4 162 IPR035892 -
Glsi09g1727 172 Pfam C2 domain 7 94 IPR000008 -
Glsi09g1727 172 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Glsi09g1727 172 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 165 IPR044562 -
Glsi09g1727 172 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 100 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1727 Glsi-ChrGlsi09 16107264 16110916 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1727 38 168 C2H2 Transcription Factor Family AT1G70790 58.015 2.27e-52 162