Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1662 ATGGCGGTTTTACCTAGATGCTCTTCCAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTTCTCCACCTCTTCCTTCATCCGTGAGAGAGTTAGACATCAATCAAGTACCCTCAGAGGAAGAATGGATGATGACAATGGAGGACGAAGAAGAAAGCAGCATTAATGGAGGTCCTCCTCGAAAGAAACTTCGCCTCACAAAGGAACAATCTCGTCTCCTTGAAGAGAGCTTCAGGCAAAACCATACTTTAAACCCAAAGCAGAAAGAGACTTTGGCAATGCAGTTGAATCTTCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACAGAAATGGAGTGCGAGTACTTGAAGAGGTGGTTCGGGTCACTCACAGAGCAGAACAGGAGGCTCCAGAGGGAGGTGGAGGAACTTAGGGCAATGAAAGTGGGACCACCCACTGTGATTTCACCTCACAGTTGCGAGCCACTTCCGGCCTCAACTCTAACTATGTGTCCTCGTTGTGAGAGGGTTACTACTACTATCACCGCCACTACTATCACTAATATTTCAGACAAGGGTCCTACCGTGATGGCTACGGAAGGCAACACTTTGTCCTCTAAAATGGCGACGCCCACCCTCCACTCTTATCACCCTTCGGCAGCTTGTTTCCCAATGTCTTCTTCTCATGTATAA 705 0.4865 MAVLPRCSSSLELTISVPGFASSPPLPSSVRELDINQVPSEEEWMMTMEDEEESSINGGPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKETLAMQLNLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTTITATTITNISDKGPTVMATEGNTLSSKMATPTLHSYHPSAACFPMSSSHV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1662 234 Coils Coil 131 151 - -
Glsi09g1662 234 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Glsi09g1662 234 Pfam Homeobox associated leucine zipper 118 152 IPR003106 GO:0006355|GO:0043565
Glsi09g1662 234 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Glsi09g1662 234 Gene3D - 54 125 - -
Glsi09g1662 234 SMART halz 118 161 IPR003106 GO:0006355|GO:0043565
Glsi09g1662 234 Pfam Homeodomain 62 116 IPR001356 GO:0003677
Glsi09g1662 234 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 45 191 - -
Glsi09g1662 234 SMART HOX_1 60 122 IPR001356 GO:0003677
Glsi09g1662 234 CDD homeodomain 61 119 IPR001356 GO:0003677
Glsi09g1662 234 FunFam Homeobox-leucine zipper protein 18 46 123 - -
Glsi09g1662 234 SUPERFAMILY Homeodomain-like 48 119 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1662 Glsi-ChrGlsi09 13661490 13665020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1662 30 185 Homeobox Transcription Factor Family AT1G70920 65.217 2.16e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi09g1662 Homeodomain 2.2e-17 CL0123