Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1659 ATGGAACAAGGTGGAGTATCAAAGGATTCTTCTAGCTGCCTCGATTGTCCTGAAGTAGTTCAAATCACACAGAAGTGTTCTTCTCTTAATTATTCTTTCTTTGCATTGCAACAGGTATTTGCGGAGGTGATTGGGACATACTTATTGGTATTTGCAGGGTGTTGTTCCGTGGTTTTGAATAAACTACATGGAGATATAACATTTCCAGGAATATGTGTGGTTTGGGGTCTTACAGTATCAGTCTTGATTTATGCGCTTGGTCACATTTCTGGTGCCCATTTCAATCCGGCAGTCACCGTCGCGTTCGCTATCTTCCGACATTTTCCGGTGAAACAGGTGCCTCTCTACATTGGCGCACAAGTGGCAGGATCTCTGCTTGCTAGCGGAACATTGTATCTTGTGTTTGATTTGGATGAGAAGCTATTTTTTGGAACAGTCCCAGCAGGAAGCAATGTTCAGTCTCTTGTGTTTGAGATCCTCACCACATTTTTCTTGATGTTTGTCGCCTCCGCAGTTGCCACAGACAGTAGAGCGATTGGAGAATTGGCAGGAATTGCTCTTGGGTTTGTCATCATAATAGACGTCTTCATTGCTGGGCCTGTGTCAGGAGCATCAATGAACCCAGCAAGAACCATTGGGCCTGCAATTGTGATGAAGATTTACAAGGGACTATGGGTTTATATAGTTGGGCCTTTTGTAGGAGCCCTACTCGGTGCCACGGCTTACAACCTCGTCAGATTTACAGACAAACCACTAAGGGATATAAGCAAAAGCTCCTCTTTCTTAAAAAGCATGTCTAAAACTAATCGCTAA 813 0.4379 MEQGGVSKDSSSCLDCPEVVQITQKCSSLNYSFFALQQVFAEVIGTYLLVFAGCCSVVLNKLHGDITFPGICVVWGLTVSVLIYALGHISGAHFNPAVTVAFAIFRHFPVKQVPLYIGAQVAGSLLASGTLYLVFDLDEKLFFGTVPAGSNVQSLVFEILTTFFLMFVASAVATDSRAIGELAGIALGFVIIIDVFIAGPVSGASMNPARTIGPAIVMKIYKGLWVYIVGPFVGALLGATAYNLVRFTDKPLRDISKSSSFLKSMSKTNR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1659 270 CDD MIP 37 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PANTHER AQUAPORIN NIP2-1 21 262 IPR034294 -
Glsi09g1659 270 NCBIfam MIP family channel protein 41 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 Pfam Major intrinsic protein 35 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 Gene3D Glycerol uptake facilitator protein. 18 256 IPR023271 -
Glsi09g1659 270 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Glsi09g1659 270 SUPERFAMILY Aquaporin-like 34 251 IPR023271 -
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi09g1659 270 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1659 Glsi-ChrGlsi09 13538582 13542043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1659 3 270 Major Intrinsic Protein MIP AT5G37820 59.124 6.68e-110 318