Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1649 ATGGCCGGCGGAGTTGCCGTCGCCGGAGACCGCACACTGGAGCTCCTTGGTCTAGTTCATGACATTTCTGGAATGTGTGGCGGAGCTGGGGGGTCCTCCTCCGCCACCGTCATGCACAGCGATGATATGTTCAAGAAGGACTGCACCGATCTGGTTCGTCGGATCTCCCTCCTTACCCATTTGTTCGAGGAGATTAGGGACTCGAAGAAGGCTGTCGTTGATTCTGGGAAGGTGGATGCTCCCACTTCGTCCACTGGCTCTGCATCTTCATGGTCTTCTGATCTGGTGCTTGCTCTCCACTCTGCTAAGCGCCTTCTTTCCGCTGCTAGGAACTTCCGTTCAAATTATTCTTCTGATGGAGCTGCCAAGACAATTGTATTCCAATTTCAGTGTGTGACATGGAAATTGGAGAAGCTATTAAGCATCTTACCGTATGACCATTTGGACATATCAGAGGAAGTCAGAGAACAGGTGGAGTTGGTGAGAACACAGTTGAGACGAGCCACAGAAAAATATGAATCAATGATTTCAAAACTGTCATCTTATGGCTCAACCCACCCACAGGCTGAAGAAATTAGTCAGTTTCTTGGAAAATCTGTGCATGGATTGCATAAACAAAATAGCTGTCCTGATCATTTATCACAACTGGAAAACTTTCCTAGAAGCAATGGATGGAAAAGTTGCAGCACAAATCAGGCAAGTCGTCGATTGGAAAGGACACGGAGCATCCCTGCATCTTCTGAGGTTTCCTTCTCAAATGTCATTGATCCTGAAAGTCAAGAAAATTCTGTGAAAAAGAGTCTGACTGAAGTTATAAAGCGTGAAGCAATTGTAATTCCTGAAGATTTCCTTTGCCCTATATCCTTGGAGCTAATGAGGGATCCTGTTATCGTGGCCACAGGTCAGACATACGAGAGATCTTACATACAGAGATGGATAGATGGAGGCAATGCAACATGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACACTTACACCAAATTATGTATTAAGGAGCCTTATTAGTCAGTGGTGTGTGGAGCACAACATTGAGCAGCCAACAGGACTAACTAATGGCAAAATAAAAAAGAGTGATGGATCATTCAGAGATGTTACGGGTGACATAGCAGCCATTGGAGCTCTGGTCCGGAAGCTCTCCAGCCGGTCCATTGAGGAGCGAATAGCAGCTGTTACTGAAATCCGATCACTTTCCAAACGAAGCACTGACAACAGAATACTAATTGCTGAAGCAGGAGCAATTCCAGTTCTGGTCAACCTTTTGACATCAGAAGATGCACTGACACAAGAAAATGCAGTTACATCAATCCTTAACCTCTCTATATATGAGAACAACAAGGGACTTATAATGCTTGCTGGTGCCATCCCATCCATTGTCCAAATCCTAAGAGCTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACCCTTTTTAGCTTGTCGCTTGCGGATGAGAACAAGATAATCATTGGTGCCTCAGGAGCTATCCCTGCTTTGGTAGAATTGCTCCAAAATGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTATTCAATTTGTGCATATATCAAGGGAACAAGGGTAGGGCCATTAGAGCAGGGATCATAACAGCATTGTTGAAAATGCTTACTGATTCGAGCAAATCAATGATTGATGAAGCCCTGACAATAATGTCAGTTCTTGCTGGCCACCAAGAGGCAAAGGTTGCTATTGTAAAGGCCAGCACCATACCTGTTTTAATAGACCTTTTGAGGACGGGACTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCCTTGTGCAAGAGGGATACCGAAAACCTGGCCTGTTTAAGTAGACTTGGTGCTGTCATACCTTTGACTGAACTTGCTCGGAGTGGCACAGAAAGGGCTAAAAGGAAGGCTACTTCATTGTTGGAGCATCTTCGAAAGTTGCAGCAGATTTGA 1977 0.4522 MAGGVAVAGDRTLELLGLVHDISGMCGGAGGSSSATVMHSDDMFKKDCTDLVRRISLLTHLFEEIRDSKKAVVDSGKVDAPTSSTGSASSWSSDLVLALHSAKRLLSAARNFRSNYSSDGAAKTIVFQFQCVTWKLEKLLSILPYDHLDISEEVREQVELVRTQLRRATEKYESMISKLSSYGSTHPQAEEISQFLGKSVHGLHKQNSCPDHLSQLENFPRSNGWKSCSTNQASRRLERTRSIPASSEVSFSNVIDPESQENSVKKSLTEVIKREAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNATCPKTQQKLQHLTLTPNYVLRSLISQWCVEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIGALVRKLSSRSIEERIAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDALTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMIDEALTIMSVLAGHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDTENLACLSRLGAVIPLTELARSGTERAKRKATSLLEHLRKLQQI 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1649 658 Gene3D - 454 556 IPR011989 -
Glsi09g1649 658 CDD RING-Ubox_PUB 280 332 IPR045210 -
Glsi09g1649 658 FunFam RING-type E3 ubiquitin transferase 558 657 - -
Glsi09g1649 658 Gene3D - 557 657 IPR011989 -
Glsi09g1649 658 SMART arm_5 531 571 IPR000225 GO:0005515
Glsi09g1649 658 SMART arm_5 449 489 IPR000225 GO:0005515
Glsi09g1649 658 SMART arm_5 408 448 IPR000225 GO:0005515
Glsi09g1649 658 SMART arm_5 614 654 IPR000225 GO:0005515
Glsi09g1649 658 SMART arm_5 572 612 IPR000225 GO:0005515
Glsi09g1649 658 SMART arm_5 490 530 IPR000225 GO:0005515
Glsi09g1649 658 SUPERFAMILY RING/U-box 273 353 - -
Glsi09g1649 658 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Glsi09g1649 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 501 543 IPR000225 GO:0005515
Glsi09g1649 658 FunFam RING-type E3 ubiquitin transferase 357 557 - -
Glsi09g1649 658 FunFam RING-type E3 ubiquitin transferase 278 353 - -
Glsi09g1649 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Glsi09g1649 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 460 502 IPR000225 GO:0005515
Glsi09g1649 658 Pfam Armadillo/beta-catenin-like repeat 491 529 IPR000225 GO:0005515
Glsi09g1649 658 Pfam Armadillo/beta-catenin-like repeat 409 447 IPR000225 GO:0005515
Glsi09g1649 658 Coils Coil 151 171 - -
Glsi09g1649 658 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Glsi09g1649 658 Pfam U-box domain 279 350 IPR003613 GO:0004842|GO:0016567
Glsi09g1649 658 PANTHER U BOX DOMAIN-CONTAINING 43 654 - -
Glsi09g1649 658 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
Glsi09g1649 658 Gene3D - 360 453 IPR011989 -
Glsi09g1649 658 SUPERFAMILY ARM repeat 378 652 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1649 Glsi-ChrGlsi09 13432278 13435129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1649 1 657 U-box Gene Family AT1G23030 61.002 0.0 730