Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1619 ATGGGGGATCATTTTGTATTGCTGGTTGATCGATTGCTTACTGAATCCACATTAGAAGCTGCACTTGAGAGCAGAAATCGTTCGATGCAGGCTGCATCCTCAGTAGTGAATGACGCAGAAGTTGATGTCTCTTTGGCGAAGATGGGTCTGCATGATATGAAGTGTCCTAGGAAAATGGTAGAATGCAGGATATGCCATGATGAGGACGAAGATTCCAACATGGAAACACCCTGCTCCTGTTGTGGTAGTTTGAAGTATGCCCACCGAAGATGTATACAAAGGTGGTGTAATGAGAAGGGTGATACCACCTGTGAGATATGCCAACAGCAATTTAAACCGGGTTATACTGCTCCACCTCCACTATTTCAATTGGGGCGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCCAGAAGAGACTTGAACAGTACTCATTTAGTTAGCATGGTTTCCACTGACCAGAATCTTATCAATGCTAGCTATGATCAGTATTCAGCTTCTAATGCAGGAAGTTTGATATGTTGTTGTTCAGTTGCCCTCATTTTCATGGTTCTACTGATTTTAAGACATACTCTTCCCCTCATATTTAGTGCAAACAAGGACTATTCCTTTCCACTCTTTATGTTATTACTATTTCGGACTGCTGGAGTTGTTCTGCCTATTTACTTCATGGTGAGAGCAGTGACGTCTATACAACGGCATCGGCGACAACAGCGGGAGCCTCCCAATGCTTTGGTTGATCTATCGGATGACGAAAACGAGCGAGTAGCTTTGCAGCCTCAGCTTCATGTCATTCGAGTTCAGTGA 810 0.4358 MGDHFVLLVDRLLTESTLEAALESRNRSMQAASSVVNDAEVDVSLAKMGLHDMKCPRKMVECRICHDEDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICQQQFKPGYTAPPPLFQLGRIPMSFRGNWEISRRDLNSTHLVSMVSTDQNLINASYDQYSASNAGSLICCCSVALIFMVLLILRHTLPLIFSANKDYSFPLFMLLLFRTAGVVLPIYFMVRAVTSIQRHRRQQREPPNALVDLSDDENERVALQPQLHVIRVQ 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1619 269 SUPERFAMILY RING/U-box 60 112 - -
Glsi09g1619 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 113 IPR013083 -
Glsi09g1619 269 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Glsi09g1619 269 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Glsi09g1619 269 CDD RING_CH-C4HC3_MARCH 62 108 - -
Glsi09g1619 269 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 239 IPR033275 -
Glsi09g1619 269 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Glsi09g1619 269 SMART ringv_2 61 108 IPR011016 GO:0008270
Glsi09g1619 269 FunFam Zinc finger family protein 50 117 - -
Glsi09g1619 269 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1619 Glsi-ChrGlsi09 13029846 13032800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1619 56 108 C3H Transcription Factor Family AT2G37950 50.000 2.35e-08 51.2