Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1586 ATGGGGTTACAAAACCAGTTAAACGACGTCTCTTCAGGTTCGATTCCGCTGCTTCTTTTGGCTCTCATCGCCAACTGCGTCAATTACCTCCGTTCCTTCCTTCTGGGTTTCCTCCAATCACTGGGTCTATCCAGATTCGACCCCAACCGAGTCGTCGTCGATGACGCCCTCTTTAGCGCTGTCGGATCGGGCCTCGCCGGCCTAATCATGCTTTCCGAGCAGCTCCACCCCAACTTATCCGACGGTTGCGGCGATGGTGGTCCAGCCGGCAGCGCGATTGGCGGCTCTAAGTGTGTGGTGTGCCAGAGCAAGTTTAGGGATGGAGACCAGGTTCGTAGGTTGCCGTGTCGCCACGTTTTTCATAGATGCTGCTTCGATGGATGGCTGCACCAACTCAAGTTTAACTGCCCTCTCTGTCGGTCCTCTCTTGTCTCCGACGAGCGCGTGGCTCTCACAGAGCGGCGCGTCGGCAGAGAACTCTTCTCTTGGTTCTCTGTGCGGTGA 504 0.5635 MGLQNQLNDVSSGSIPLLLLALIANCVNYLRSFLLGFLQSLGLSRFDPNRVVVDDALFSAVGSGLAGLIMLSEQLHPNLSDGCGDGGPAGSAIGGSKCVVCQSKFRDGDQVRRLPCRHVFHRCCFDGWLHQLKFNCPLCRSSLVSDERVALTERRVGRELFSWFSVR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1586 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 150 - -
Glsi09g1586 167 SMART ring_2 98 139 IPR001841 -
Glsi09g1586 167 Pfam Ring finger domain 97 140 IPR001841 -
Glsi09g1586 167 SUPERFAMILY RING/U-box 97 146 - -
Glsi09g1586 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 154 IPR013083 -
Glsi09g1586 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1586 Glsi-ChrGlsi09 12526415 12526918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1586 1 167 C3H Transcription Factor Family AT1G15100 52.071 2.52e-47 149