Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1580 ATGCATAACAAGGACGCTTCCTCTCCATCGTCCAATGGCGGACTTGGCGCTAAGACCATCACCATTACCGCCACTACGGGCCAGATTCCAACAAACGACGCTGCCTTTGATTCCGTCTACTCTACGTTGTTCACTGATGCCAAGTCGGGCCTCTCAGCCACCAGCAATGGCGGTCTCTCATCGCTTCACCCGTATGAAGGAAACTCTGGCTTGAAGTTCACTGATTCTGGGATTGATCAGAACAACCAGCTGTACGAATCTTGCGTCATACAGAAACACCAGGATATGGTGAACCACCACAATATGTGCCTCACTCGCCTCGTTGAAACTTCGAAAGAGGTCGAAGCTCTGCGACAAGAGAACACACAACTTCGGGCTGCCAACGTTGAGCTGCAAAAGCAGTTGAGCCTCTTCATTCAGGCTTCGCTCCCGAGCCAATTTGATGGTTCCTCTGGCCTTACGACGCCATTCGATATTGCAAATGGGTTTCGTGGGTTCCATATAGGAGACAATTGCAGGGATGGGAAAGAGAATGCTGATTGGAATAAGGGCCAGGAAGTTTCGGACGAGAGTCCAACCAGCGTGATTGACAACAACACTGTTCAAGTGGAGAGGTTCTCGCTGCCCAAAAGCATATCTGTGAGGTCAAATGGGTACTTGAAGATGGCTCAGGCTGTAGCCACTGCCAGCAATAGCAGCCGCACCAAGGGCGCTACACGCCCACGGGCGTCCTCGACTCCACCAGATGTCGTGCAAAAGGTATATGTGCGTGGAGGGAAGAAGGAGGAAGAGCCTCTTGAGATGATGGTGTATAACCAAGGCATGTTCAAGACTGAGTTGTGCAACAAATGGCAGGAAACTGGCACATGCCCTTATGGAGATCACTGCCAATTTGCTCACGGTATTGAGGAGCTCCGCCCAGTCATTCGCCACCCGCGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGCGTTGCATGCCCATATGGCCACAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCTTTAGGGCAGCCTAAGTCCAGGGCGATGAAGCTGGAAAGATAA 1080 0.5167 MHNKDASSPSSNGGLGAKTITITATTGQIPTNDAAFDSVYSTLFTDAKSGLSATSNGGLSSLHPYEGNSGLKFTDSGIDQNNQLYESCVIQKHQDMVNHHNMCLTRLVETSKEVEALRQENTQLRAANVELQKQLSLFIQASLPSQFDGSSGLTTPFDIANGFRGFHIGDNCRDGKENADWNKGQEVSDESPTSVIDNNTVQVERFSLPKSISVRSNGYLKMAQAVATASNSSRTKGATRPRASSTPPDVVQKVYVRGGKKEEEPLEMMVYNQGMFKTELCNKWQETGTCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVACPYGHRCHFRHALTEQEKALGQPKSRAMKLER 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1580 359 FunFam zinc finger CCCH domain-containing protein 15-like 269 308 - -
Glsi09g1580 359 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 301 IPR000571 GO:0046872
Glsi09g1580 359 SUPERFAMILY CCCH zinc finger 309 343 IPR036855 GO:0046872
Glsi09g1580 359 Gene3D - 269 308 - -
Glsi09g1580 359 Gene3D - 309 345 - -
Glsi09g1580 359 Coils Coil 107 134 - -
Glsi09g1580 359 ProSiteProfiles Zinc finger C3H1-type profile. 275 303 IPR000571 GO:0046872
Glsi09g1580 359 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Glsi09g1580 359 FunFam Zinc finger protein 36, C3H1 type-like 1 309 345 - -
Glsi09g1580 359 SUPERFAMILY CCCH zinc finger 272 307 IPR036855 GO:0046872
Glsi09g1580 359 PANTHER CCCH ZINC FINGER/TIS11-RELATED 93 348 IPR045877 GO:0003729
Glsi09g1580 359 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Glsi09g1580 359 SMART c3hfinal6 275 302 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1580 Glsi-ChrGlsi09 12410098 12411974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1580 82 357 C3H Transcription Factor Family AT1G68200 53.448 1.52e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi09g1580 zf-CCCH 2.9e-12 CL0537