Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1577 ATGGAGGATGGAACTGTGCCATTGATCAATTATGTTCCCAGCTTTGCTCAAGGCCTTAGCATTCTGCTGGTTCATAATGACACTGTGTCTCTCAAGAACCTCTCATCAATGCTTCTGCAGTATTCCTTCAGAGTTACTGTTACTTATGAAGCACAAACAGCTCTGTCCTTGATTTACAAACAAGAAGGCCAATTCAACTTGGTAATGGCTAAAGCTAATGTGCCTGACATGGAAATTCTTTCTTTTCTGTACTTCATGTCTGAAAAAGACATCCCTGTGATCTTTATCTCAGACGAAGCATACGATGGCGTAACTTGGAAAGCATTAGCCAAAGGATCATGCTATTTCCTCAAGGAACCTATCCTTTTAGAGGATCTCAAATATGTGTGGCAGCATGTGTATCACAAAAAACTCAACGCAATTGAGAAAAATCAAAGAATAAAGGGTAAAGACAAGGTTTACGGAACTTGCGATGTTAACAAGTGCATACAAAATGAGAAGAGCAAAAGTTCCCAGATGCACTTTGTCGGCAATCTAGGTGCTCTTGAGGAGGAGGGTGGGGGAAGGAGAAAATATAATATCTTTCAATATGTTGAGAAAAAGTCACGCATTGTTTGGACTCCAGAGCTTCACCAAAAGTTTAAGGATGCCCTTAGTGTTCTAGGCGACCAGAATGTTCGTCCAAAAGCTATAAAACAACAAATGAATGTGCCTGGCCTAACAGCTCGCCATATTGCAAGTCATCTGCAGAAATACAAATCTCAAACACGGATAGATCAGGAGGCCTACAATTCTGGTTCACCTCCTCCGAGTAAATCATCAAACCTAAGTGGTTTCCCTGTATCCACTGCTTCCCTGAGTGAGAGCCAGAATCAGAACCAGTTTCCCGTGAACTTCACTGAAACTCAACAGTCAAATATTCTGCAGCTGCAGCAAACCCCAGGAAATCCAAACTTTACATCTGTACTTCCAACAGAAACGGCCAATTGTGGAAGCCAAAATCAAGAAGCTTCAATGGATCAAAACCTACCCATTTTAGCATATGCTAAGCAAAGAATGCTTGAGGAAGATTGTGATATGGATATTGATTATGACTATTCTAGACATGGAGTACTTCCAGAGGATGTTAATCAGTACAGTGAGATACTAAGGGAAGTTCTCCTTGGAAATAGCCCTGGCCCACAAGAGCCTGATATCTAA 1200 0.4133 MEDGTVPLINYVPSFAQGLSILLVHNDTVSLKNLSSMLLQYSFRVTVTYEAQTALSLIYKQEGQFNLVMAKANVPDMEILSFLYFMSEKDIPVIFISDEAYDGVTWKALAKGSCYFLKEPILLEDLKYVWQHVYHKKLNAIEKNQRIKGKDKVYGTCDVNKCIQNEKSKSSQMHFVGNLGALEEEGGGRRKYNIFQYVEKKSRIVWTPELHQKFKDALSVLGDQNVRPKAIKQQMNVPGLTARHIASHLQKYKSQTRIDQEAYNSGSPPPSKSSNLSGFPVSTASLSESQNQNQFPVNFTETQQSNILQLQQTPGNPNFTSVLPTETANCGSQNQEASMDQNLPILAYAKQRMLEEDCDMDIDYDYSRHGVLPEDVNQYSEILREVLLGNSPGPQEPDI 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1577 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Glsi09g1577 399 Gene3D - 19 153 - -
Glsi09g1577 399 MobiDBLite consensus disorder prediction 251 291 - -
Glsi09g1577 399 SUPERFAMILY CheY-like 17 137 IPR011006 -
Glsi09g1577 399 FunFam Two-component response regulator 198 259 - -
Glsi09g1577 399 Gene3D - 198 258 - -
Glsi09g1577 399 CDD REC_typeB_ARR-like 21 134 - -
Glsi09g1577 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 206 257 IPR017930 -
Glsi09g1577 399 SUPERFAMILY Homeodomain-like 199 255 IPR009057 -
Glsi09g1577 399 ProSiteProfiles Response regulatory domain profile. 20 134 IPR001789 GO:0000160
Glsi09g1577 399 PANTHER - 10 289 - -
Glsi09g1577 399 Pfam Myb-like DNA-binding domain 206 253 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1577 Glsi-ChrGlsi09 12382056 12386900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1577 12 263 Response Regulator Gene Family AT1G68210 33.677 1.78e-37 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Glsi09g1577 Myb_DNA-binding 3.4e-07 CL0123