Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1571 ATGGATTCAAACACTTCGAGCTTTCTCTTCAACTCTTCAAATTTTCCCTCGGCTTTCTACCAAGCCAAACAGGATGATGATGGTGGCGGCATGATTGATCTGGGCCTTAGTCTCAGAACTGTGCAGCCTGAAGCTTATCATCACTCTTCCGGCAACTTGTTAAATTTGGGGGGATATGATCACCTCATGAATTGGCCACAGTCTAATCTCAACCTGAAGAGCTCAGGCACAATGCAGTCTAGATCTGTCCCAGAAATTTTTGATGAAGAGACAGAGGGAGTGCAAAGCAATGAGAGGTGGGCTTATGTGAAGGTCAACATGGATGGGGTCGCCGTTGGCAGGAAAATTTGTGTGCTTGATTTTGAAGGTTACCCAAGTCTTGCAATCCAATTAGAAAACATGTTTGGAACCAAATCTGTTTCTGGTTTAAGATTGTTCCAATCTGGGTCAGAGTACTCACTGTTTTACAAGGACAGAGAAGATAATTGGAGAACTGTAGGAGATGTCCCATGGAAGGAGTTTGTAGAATGTGTGAAGAGGTTGAGGATTGCAAGAAAGAATGCAGCCTCTGTTTCTTGCTCATCTAGAAATACCTAA 597 0.4338 MDSNTSSFLFNSSNFPSAFYQAKQDDDGGGMIDLGLSLRTVQPEAYHHSSGNLLNLGGYDHLMNWPQSNLNLKSSGTMQSRSVPEIFDEETEGVQSNERWAYVKVNMDGVAVGRKICVLDFEGYPSLAIQLENMFGTKSVSGLRLFQSGSEYSLFYKDREDNWRTVGDVPWKEFVECVKRLRIARKNAASVSCSSRNT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1571 198 Gene3D - 94 196 - -
Glsi09g1571 198 ProSiteProfiles PB1 domain profile. 100 188 IPR000270 GO:0005515
Glsi09g1571 198 SUPERFAMILY CAD & PB1 domains 100 183 - -
Glsi09g1571 198 Pfam AUX/IAA family 90 189 IPR033389 -
Glsi09g1571 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 60 189 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1571 Glsi-ChrGlsi09 12331783 12334397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1571 101 183 B3 DNA Binding Superfamily AT1G19850 42.169 4.14e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi09g1571 AUX_IAA 4e-22 CL0072