Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1561 ATGTCCACATTGTGTTTGGGAAAAATCCCAGATGAACCCAAAATGTCTCTTCCTTGCTCCTATTCTCCTTTGCTCAACTCTTTCTTTTTTTTATTATCTCTTTTAACCAGAATCACCTTGTGTTCATCTCTGAATCCGAAGTTCCAAGCTTGTAAGCCCAGAAGTTGTGGTAATCTCCAAAACATAAGCTACCCTTTTTATATTGAAGGAATACAAGAAGCCTTTTGTGGGTTCCCTGGTTTCGCCCTTTCTTGTATCGATAATAGCTTCCCAGTTCTTAATATCTTCGAAAACCGATATATTGTACATCAGATTTTCTACAATAACCAGTCAATTCGAGTGTCCGATGCTGGGCTGAACACCACAGGTTGTCTCCGTCGGACCAACAACCTCACCATTTACGAGAGCAGGTTCCGTCTTGCTCCGAACCAGAAGGAACTGTTCTTGGTGTTCGGCTGCAACTTAGCACCATCGTCGCAGCTGACAGACTACAGAATAGGATGTTCTGCAGAAAACGAAACGGACTCTGTTTTGGCCATGTATGGGGATGAGGGTGAAGACTTGAGCTTGGCGTCGAAGAATTGTAACGGTGGGGTGGTGAAAGCAAACGTGGAAGATGGGTATGGTGAGAAAGGAAGGATTAGAGAGGGATTGAGAAGAGGGTTTGTGTTGAATTGGACTGCATCGGATTGCAGCCTGTGCACGAAGACTGGAGGGCAGTGCGGGTTCGACTTCGACCGAGAAGTATATAGTTTCAGGTGCTATTGCCCTGATAGAGATCATGCTTGGAAATGTGATCCTGATAAGAGCAGGGTTTTGAAGCTGAGACTGGGACTAGGACTAGGACTAGGTTTAGGTATTGGACTTCCAGCCATTCTGATAATGGGGTGGCTCATTGGAGGGCTCTACAAACGAAGATATGGTGCTGCTGATGACCAATTCGACGAAAGAAAAAGTTATTCTGATGCCAAGTCAAATCCAGACCCAGAAAGTGGGAGTATGTATTTTGGGGTCCCGCTTTTCTCTTACAAGGAGCTTCAAGATGCAACAAATAACTTCCACCACACCAGAACACTTGGCGATGGAGGCTTTGGGATTGTTTATTATGGAAAACTCAGAGATGGCAGAGAAGTTGCAGTGAAGCACCTATATGAGCACAACTACAGGCGAGTAGAACAGTTCAGGAACGAAGTGGAGATTCTCACGCGCTTGCGCCACAAAAATCTTGTGTCCCTCTATGGCTGCACTTCGCGTCAGAGCCGAAAGCTCCTTCTGGTCTACGAATACATCCCGAACGACACTGTTGCTTCTCATCTCCATGGCGATTTAGCAAAGCCGGGGCTTCTTCCTTGGTCTATCCGAATTAAAATCGCCATAGAAACTGCAAGTGCGCTGGCTTATCTTCATGCCTCAGACATCATTCATCGTGATGTCAAAACCAGCAACATTCTACTTGACAATAGTTTCTGTGTTAAGGTTGCAGATTTTGGACTGTCCAGGTCGTTCCCCAACGACGTCAGCCATGTTTCTACGGCTCCACAAGGAACCCCAGGTTATGTTGATCCCGAATATTACCAGTGCTACCAGCTTACCAGCAAGAGTGATGTATATAGTTTCGGGGTTGTGCTGATTGAGCTGATAGCTTCTATGCCAGCAGTTGATATGGGAAGGGATAGGGATGAGATTAATTTGTCAGATCTAGCAATAAAGAAGATTCGAGAGAGTGCATTTGATGAGCTGGTAGATTCTTCTCTGGGGTTTGACACAGACAGTGAGGTTAAGAGGATGATAGTTTCAGTGGGGGAATTGGCTTTTCAGTGTTTGCAAAAGGATAAAGAGTTGAGACCTTCCATGGATGAGGTTTTGGAGGTTCTGAGGAGGATAGAGAGCAGAAAAGATGAGCCCCACGAGCAGGTACAGGAAGGAGATGGTGATGGTGGTGGCAATGGTGTTTCACAGAGTGATAATGTGCATCCACCGCCACGGCCATCACCGGACTGGGAAGAGGTTGGATTGTTGAAGAAGATGAAGCTACTACTACCTACTTCGCCAAACACGGTGACTGGTAAATGGGAAAGCGAATCTACTACACCGAATATCAGTGGTTGA 2109 0.4585 MSTLCLGKIPDEPKMSLPCSYSPLLNSFFFLLSLLTRITLCSSLNPKFQACKPRSCGNLQNISYPFYIEGIQEAFCGFPGFALSCIDNSFPVLNIFENRYIVHQIFYNNQSIRVSDAGLNTTGCLRRTNNLTIYESRFRLAPNQKELFLVFGCNLAPSSQLTDYRIGCSAENETDSVLAMYGDEGEDLSLASKNCNGGVVKANVEDGYGEKGRIREGLRRGFVLNWTASDCSLCTKTGGQCGFDFDREVYSFRCYCPDRDHAWKCDPDKSRVLKLRLGLGLGLGLGIGLPAILIMGWLIGGLYKRRYGAADDQFDERKSYSDAKSNPDPESGSMYFGVPLFSYKELQDATNNFHHTRTLGDGGFGIVYYGKLRDGREVAVKHLYEHNYRRVEQFRNEVEILTRLRHKNLVSLYGCTSRQSRKLLLVYEYIPNDTVASHLHGDLAKPGLLPWSIRIKIAIETASALAYLHASDIIHRDVKTSNILLDNSFCVKVADFGLSRSFPNDVSHVSTAPQGTPGYVDPEYYQCYQLTSKSDVYSFGVVLIELIASMPAVDMGRDRDEINLSDLAIKKIRESAFDELVDSSLGFDTDSEVKRMIVSVGELAFQCLQKDKELRPSMDEVLEVLRRIESRKDEPHEQVQEGDGDGGGNGVSQSDNVHPPPRPSPDWEEVGLLKKMKLLLPTSPNTVTGKWESESTTPNISG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1561 702 MobiDBLite consensus disorder prediction 681 702 - -
Glsi09g1561 702 SUPERFAMILY Protein kinase-like (PK-like) 327 631 IPR011009 -
Glsi09g1561 702 Pfam Wall-associated receptor kinase C-terminal 189 258 IPR032872 -
Glsi09g1561 702 Pfam Protein kinase domain 353 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1561 702 Gene3D Transferase(Phosphotransferase) domain 1 430 641 - -
Glsi09g1561 702 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
Glsi09g1561 702 SMART serkin_6 353 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1561 702 FunFam Wall-associated receptor kinase-like 20 430 638 - -
Glsi09g1561 702 ProSiteProfiles Protein kinase domain profile. 353 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1561 702 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 28 695 IPR044652 GO:0004672
Glsi09g1561 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 473 485 IPR008271 GO:0004672|GO:0006468
Glsi09g1561 702 MobiDBLite consensus disorder prediction 628 702 - -
Glsi09g1561 702 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Glsi09g1561 702 Pfam Wall-associated receptor kinase galacturonan-binding 51 116 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1561 Glsi-ChrGlsi09 12196741 12204814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1561 230 702 Receptor kinase-like Gene Family AT1G25390 54.489 1.11e-163 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi09g1561 Pkinase 1.5e-48 CL0016