Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1555 ATGAGCGGTGTCCCTAAATACTTAGCCAATTTTACAGGATGTCCTGATATCTACTTCAATCCTAACAGAACAGTTGACAAGTTGCCCAGCTCTTTATATGCATGTTCCACTATCTGGGTTTCATTTAAAAATCCACCTCCTGGCCATTCCTTCAAGGCCGACCTATTTGCATACTTAAGTGCTCTAACCCATATAGCAGTAGAAGTATCTGAGTCTTGTCATGATTGTTATTATAGAAGAGGAGGGCAATGTATAGCTGAAGGAGATTCGTGTTTTGTTCATGGTTTAGCAGTGGGAATCCCAGCCGCAATTACAATTGTCCTGTTAGTCATTCTAGTGGTGAAAATACGAAGACACAAGTCTTCAGGCTTCCAAAACCAATCAAGAAACATTCATTCTAATAGCTACTCAAATACAAACCCAGAAAGTGGACCTGTCTTCTTGGGAGTCCTTATCTTCTCCTATGAGGAGCTGGAAGAGGCTACAAACAAATTTGATCCATCTAGAGAACTTGGAAAAGGAGGCTTTGGTACTGTTTACTATGCAAAACTTAAAGATGGAAGGGAAGTTGCTGTAAAGCGCCTATTTGAGCGCAACTACAGGCACGTAGAGCAATTCATGAATGAAATCCGGATCCTCACACGCCTGCGCCACAGAAACCTTGTGTCACTCTATGGCTGCACTTCGCGTCACAGCCGGGAGCTACTCCTAGTCTATGAGTACATCTCAAATGGCACTCTTGGTTGTCATCTCCATGGCAATCTAGCACAGCCTGATTCACTACCATGGCCTATAAGAATGAATATTGCCATAGACACTGCAAGTGCATTGGCTTATCTCCATGCTTCTGGCATCATACACCGTGATGTCAAAACCAGCAATCTTCTCCTTGATAAGAATTTTTGTGTTAAGGTTGCAGACTTTGGGCTTTCAAGGTTGTTCCCCAACTATGTCTCCCATGTCTCCACAGCCCCACAAGGAACTCCAGGTTATCTTGATCCAGAATATCACCAATGCTACCAACTTACCAACAAGAGTGATGTATATAGCTTTGGGGTTGTGCTCATTGAGCTGATATCTTCTATGCCAGCTGTTGATATCACGAGGAGTATAGATGAGATTAAATTGGCAAAACTAGCCATAAAGAAGATTCAAAGAAGGGAATTTACTGATATGGTAGATCCTTGCCTTGGTTTTGAGTCAGATAATGAGGTCAAGAGGATGATAGTTTCAGTGGCAGACTTGGCTTTTCAGTGTTTGCAACGGGACAAGGAATTGAGACCTTCCATGGCTGAAGTTGTGAAGGTGCTGCAGAAAATTGAAAGTGGAAAAGATGAGCCTGGGGATCTTGAGGCGTATGGTGCTGGGATTCCCAATAGGGATATTAATACAGCTCCACCTACCTCTCTGAATAGGGATGGGCTTGGATCATTTGAGAATCTGAAGCCACAACGCCTTCACCAAACACTATGA 1473 0.4311 MSGVPKYLANFTGCPDIYFNPNRTVDKLPSSLYACSTIWVSFKNPPPGHSFKADLFAYLSALTHIAVEVSESCHDCYYRRGGQCIAEGDSCFVHGLAVGIPAAITIVLLVILVVKIRRHKSSGFQNQSRNIHSNSYSNTNPESGPVFLGVLIFSYEELEEATNKFDPSRELGKGGFGTVYYAKLKDGREVAVKRLFERNYRHVEQFMNEIRILTRLRHRNLVSLYGCTSRHSRELLLVYEYISNGTLGCHLHGNLAQPDSLPWPIRMNIAIDTASALAYLHASGIIHRDVKTSNLLLDKNFCVKVADFGLSRLFPNYVSHVSTAPQGTPGYLDPEYHQCYQLTNKSDVYSFGVVLIELISSMPAVDITRSIDEIKLAKLAIKKIQRREFTDMVDPCLGFESDNEVKRMIVSVADLAFQCLQRDKELRPSMAEVVKVLQKIESGKDEPGDLEAYGAGIPNRDINTAPPTSLNRDGLGSFENLKPQRLHQTL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1555 490 MobiDBLite consensus disorder prediction 447 478 - -
Glsi09g1555 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Glsi09g1555 490 CDD STKc_IRAK 171 440 - -
Glsi09g1555 490 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 49 446 IPR044652 GO:0004672
Glsi09g1555 490 Gene3D Transferase(Phosphotransferase) domain 1 242 447 - -
Glsi09g1555 490 SUPERFAMILY Protein kinase-like (PK-like) 141 441 IPR011009 -
Glsi09g1555 490 Pfam Protein kinase domain 168 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1555 490 SMART serkin_6 165 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1555 490 FunFam receptor-like protein kinase FERONIA 125 241 - -
Glsi09g1555 490 ProSiteProfiles Protein kinase domain profile. 165 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1555 490 FunFam Wall-associated receptor kinase-like 20 242 449 - -
Glsi09g1555 490 ProSitePatterns Protein kinases ATP-binding region signature. 171 193 IPR017441 GO:0005524
Glsi09g1555 490 Gene3D Phosphorylase Kinase; domain 1 141 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1555 Glsi-ChrGlsi09 12123796 12127324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1555 34 442 Receptor kinase-like Gene Family AT1G25390 52.706 6.37e-140 414
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Glsi09g1555 Pkinase 5e-48 CL0016