Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1521 ATGGCTACAATTACAAAGAGAAAGTTGGGCTCTAATGAAGAAGAGAGTGAACTGAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGTCTTCTAATCCACTATATTGCTCGTCATGGTGAAGGTCGTTGGAATATGTTGGCCAAAAGTGCAGGTACATATTCTTTGAGCTCTAACACTAGATTGAAGAGGAATGGAAAAAGTTGCAGACTGAGATGGTTGAACTACTTGAAACCCGATATCAAGCGGGGGAATCTTACCCCACAAGAGCAGCTCTTGATCCTTGAACTCCACTCGAGATGGGGTAACAGGTGGTCAAAAATTGCTCAGCATCTCCCAGGAAGAACTGATAATGAGATAAAGAACTATTGGAGAACAAGAGTACAAAAACAAGCACGCCAACTTAACATAGAGTCTAATAGCAAGAAATTCATTGACGCAGTTCGGTGTTTCTGGATGCCAAGATTGCTTCAGAAGGTGGAAGAACAGAAACAGAACACTCCCTCTAGCTCATACGCTTCTCTACAAACCATGAATCTTGGGGTTTCTGCAGAAACTCCATTCTCAAACTACTCTGCTATTCCTTCTCTGGCTCCATCATCTCCACAAAGAAACTTCGTAGATTCTGCAAATCATTCAACCACTGTGTCCTCCAGCTCCACCAATTTTCCCGCAGATTCCCAGCAATTGTCTCAGATGCTTGAAATCTCAGAAATCCCAACAAGTCCTTTTTTGTTTGAGAACAATTTTTGCAGCAACCCATTTCAGGAAAACTGGTATCTGAATTCCACTTGCTATGGAATGGAAGGTCTGAATCAGCAAACTTATGATTTTTCACAGTTTGATTATCAGATAGCAGAGAATGACTGGCTTTCCGGAAACACGGGTGACTCTTTATGGAACATGGAAGCAATGTGA 915 0.4219 MATITKRKLGSNEEESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGTYSLSSNTRLKRNGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESNSKKFIDAVRCFWMPRLLQKVEEQKQNTPSSSYASLQTMNLGVSAETPFSNYSAIPSLAPSSPQRNFVDSANHSTTVSSSSTNFPADSQQLSQMLEISEIPTSPFLFENNFCSNPFQENWYLNSTCYGMEGLNQQTYDFSQFDYQIAENDWLSGNTGDSLWNMEAM 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1521 304 Gene3D - 20 81 - -
Glsi09g1521 304 MobiDBLite consensus disorder prediction 1 20 - -
Glsi09g1521 304 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 35 44 IPR001345 GO:0003824
Glsi09g1521 304 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Glsi09g1521 304 ProSiteProfiles Myb-like domain profile. 15 76 IPR001005 -
Glsi09g1521 304 CDD SANT 22 76 IPR001005 -
Glsi09g1521 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 76 IPR017930 -
Glsi09g1521 304 Gene3D - 85 127 - -
Glsi09g1521 304 FunFam Myb transcription factor 20 81 - -
Glsi09g1521 304 FunFam MYB transcription factor 86 149 - -
Glsi09g1521 304 SUPERFAMILY Homeodomain-like 18 123 IPR009057 -
Glsi09g1521 304 SMART sant 19 78 IPR001005 -
Glsi09g1521 304 SMART sant 81 129 IPR001005 -
Glsi09g1521 304 CDD SANT 86 125 IPR001005 -
Glsi09g1521 304 Pfam Myb-like DNA-binding domain 20 76 IPR001005 -
Glsi09g1521 304 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Glsi09g1521 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Glsi09g1521 304 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 218 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1521 Glsi-ChrGlsi09 11653411 11654637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1521 15 168 MYB Transcription Factor Family AT1G68320 75.325 1.77e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi09g1521 Myb_DNA-binding 9.3e-13 CL0123