Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1520 ATGAGCAAGGGGAAGAATATTCATAGCTTGAGCAATCAAGGATTGATCATGCCTTTGATCTACAATGACAGCCTTTTGGATCAACAGCTTAATTTCCCAAATTCTTCTATCCCACTGATTCAGCCATCATCATCCACTACCTTTGTTTCTGGGTTTAATCATGAACAAGCGGAGACGATGCCTATGTCAGAAAGCTTAGGGGAGGGCTCTTCTTCTCCATATTCTCCTGCTGATCTTCCTGAAAAGAATAAGAAAAGGGTTGGATACAAAAGAAAGAGAAACAATGGCAGATTTGAAGAGAAACCAGAAGAAGTCATCCATGTAAGGGCAAAAAGAGGCCATGCTACTGACAGCCACAGTCTAGCAGAAAGGGTGAGAAGAGAGAAAATCAATGAGAAGCTAAGATGTTTGCAGGATTTGGTTCCTGGGTGCTATAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATCATAAACTATGTTCTATCGCTTCAGCAACAGATTGAGTTTCTCTCCATGAAGCTTTCAGCAGCAAGTATGTATTTTGATTTCAACACTTGGGAGATGGATGCCACTGGAACCATGCAGAGGAGTACTGGCACAGATGAAATCCAAGGGACTGAAAGGATGGCAGGAGAAGGCTATGGAGGGTTTCCTTATTTCGACCCGCCACTTCGTTAA 681 0.4273 MSKGKNIHSLSNQGLIMPLIYNDSLLDQQLNFPNSSIPLIQPSSSTTFVSGFNHEQAETMPMSESLGEGSSSPYSPADLPEKNKKRVGYKRKRNNGRFEEKPEEVIHVRAKRGHATDSHSLAERVRREKINEKLRCLQDLVPGCYKAMGMAVMLDVIINYVLSLQQQIEFLSMKLSAASMYFDFNTWEMDATGTMQRSTGTDEIQGTERMAGEGYGGFPYFDPPLR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1520 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 72 189 IPR024097 GO:0006355
Glsi09g1520 226 CDD bHLH_AtBPE_like 104 185 - -
Glsi09g1520 226 Pfam Helix-loop-helix DNA-binding domain 118 142 IPR011598 GO:0046983
Glsi09g1520 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 164 IPR011598 GO:0046983
Glsi09g1520 226 SMART finulus 120 170 IPR011598 GO:0046983
Glsi09g1520 226 MobiDBLite consensus disorder prediction 59 93 - -
Glsi09g1520 226 Gene3D - 115 177 IPR036638 GO:0046983
Glsi09g1520 226 MobiDBLite consensus disorder prediction 197 216 - -
Glsi09g1520 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 183 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1520 Glsi-ChrGlsi09 11645564 11647322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1520 95 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 74.510 8.82e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1520 HLH 7e-05 No_clan