Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1514 ATGACACCTTCTTTCTTCTCTTCTCATATCCACCATTGCTCTCCCATTAAATTTCACCATTCTTCCCTCATTCTTTCCCCTCCAACGCCTTCTTCCCGCAGACCCCGCTGGCTACGAATGGACGCCACCTCCGCCTACCACCGCCACCGCCGGAAGGACAAGGTGGTTGTCATCATGGGCGCCACCGGGACCGGAAAGTCTCGCCTTTCTGTTGAGCTCGCCACCCGTTCTGCCTCTTCGGAAATCATCAATTCTGACAAAATGCAAGTCTACAGAGGTCTCGACATCACCACCAACAAGATCCCCCTCGACGAACGGAACGGCGTCCCCCACCATCTTCTCGGAGAGGTCGACCCGATGAACGGAGAGTTTTCCCCGTCGGATTTTCGGTTGAGTGGGGGCTCTGTTATCTCGGATATCTGTTCAAGGAGGAAGTTTCCCATCGTCGTTGGTGGGTCCAACTCGTTCGTACATGCTCTTCTGGTGGACCGATTCGATCCTGAGTTGAATGTGTTTAATGGGTCATCGTCGATCTCGTCCGAGTTGAGGTACAAGTGCTGCTTCCTCTGGGTGGACGTCTCATTCCCTGTGTTATCGGAATACTTATGGAAGCGAGTCGACGACATGCTTGACTCAGGAATGGTGAACGAGTTGGCTGAGTTCTTCAACCCGGAAGCGGGCGACTTGGACGATGACTCTGCCCACCGGACTGGGTTGAGGAAAGCCATCGGCGTACCCGAGTTCGACAGGTATTTCAAGAAATACCCACCACCGGGTGGGCTCAGGCTGGGAGGAGATGATCAGCTGCGGAAGGCTGCATACGAGGAGGCAGTGAAGGCTATAAAGGACAACACGTGTCAGCTAGTGAAAAGGCAGATAGCAAAGATCTTGCGGCTAAAAGGGGCAGGGTGGGACCTACAGAGGGTGGACGCAACGGAAGCGTTTCGGGAGGCGATGACGTCAGGATGTTCCGGCGACGGCGGCGGAGAGAAGTGGTCAGATATTTGGGAGAGACAGGTGGCGGAACCAAGCGTGAAGATTGTGAAGCGGTTCTTGAAGGAGTAG 1065 0.5455 MTPSFFSSHIHHCSPIKFHHSSLILSPPTPSSRRPRWLRMDATSAYHRHRRKDKVVVIMGATGTGKSRLSVELATRSASSEIINSDKMQVYRGLDITTNKIPLDERNGVPHHLLGEVDPMNGEFSPSDFRLSGGSVISDICSRRKFPIVVGGSNSFVHALLVDRFDPELNVFNGSSSISSELRYKCCFLWVDVSFPVLSEYLWKRVDDMLDSGMVNELAEFFNPEAGDLDDDSAHRTGLRKAIGVPEFDRYFKKYPPPGGLRLGGDDQLRKAAYEEAVKAIKDNTCQLVKRQIAKILRLKGAGWDLQRVDATEAFREAMTSGCSGDGGGEKWSDIWERQVAEPSVKIVKRFLKE 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1514 354 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 195 306 - -
Glsi09g1514 354 Pfam IPP transferase 89 163 - -
Glsi09g1514 354 Pfam IPP transferase 181 293 - -
Glsi09g1514 354 Gene3D - 52 352 IPR027417 -
Glsi09g1514 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 230 IPR027417 -
Glsi09g1514 354 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 52 352 IPR039657 -
Glsi09g1514 354 FunFam Adenylate isopentenyltransferase 195 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1514 Glsi-ChrGlsi09 11549464 11550528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1514 183 353 C2H2 Transcription Factor Family AT2G27760 28.646 8.94e-14 70.5