Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1510 ATGTGTGATAGTCTAGGGGAGGAGAAATATGAAATTAATGCCAAGATTCCAGAAGGTAATCCATTAGACCTCAACACTTTGCCCGATGATTATTACTCCAGAGATGAAAGCTGTAGGGAAAAGAAAAGAGAGGGGAAGAAGAATGGGAAGGTGTACAAGTGCAGATTTTGTTCCCATAAGTTCTACAAGTCTCAGGCTCTTGGGGGACACATGAACCGCCACCGCCAAGGCTAG 234 0.4444 MCDSLGEEKYEINAKIPEGNPLDLNTLPDDYYSRDESCREKKREGKKNGKVYKCRFCSHKFYKSQALGGHMNRHRQG 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1510 77 PANTHER ZINC FINGER PROTEIN JAGGED 39 77 IPR045320 GO:0003700
Glsi09g1510 77 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Glsi09g1510 77 Gene3D Classic Zinc Finger 31 77 - -
Glsi09g1510 77 SUPERFAMILY beta-beta-alpha zinc fingers 48 75 IPR036236 -
Glsi09g1510 77 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 77 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1510 Glsi-ChrGlsi09 11476851 11477672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1510 18 76 C2H2 Transcription Factor Family AT1G13400 55.405 5.54e-16 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1510 None None None