Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1502 ATGACTTCTGCTAAGAAGGTAGCAAACGCCGTTGGTGGAAAAACCGCCAGAGCCTGTGATAGCTGCATAAGAAAGAGGGCACGATGGTACTGTGCTGCCGACGATGCTTTCCTCTGCCAAACTTGTGACTCTGTGGTCCACTCGGCGAACTCATTGGCTCGTAGACACGAAAGGGTCCGCTTGAAAACGGCGTCGTACAAGTCCTCCGACCTAACTTTGCCGGTGGATCTCAATTGGGCTCCGTCTTGGCATCGAGGATTTACCAAAAAAGCTCGAACCCCTCGTCATGGGAAGCATTCGGCCATCAATCAAACAGCTAAAGCGCAAGACGAGCCGCCTACGAGGAACCCATTTCATCTGGTGCCGGAAGTGGGTTCGGATGAATCGATTAATTCCCACGAAGATAACGAAGAGCAGCTTCTTTATAGGGTGCCCATATTCGACCCTTTTGCCACTGAGATATGCAGCACTCCTCCGTCTTCTGTGACTTCAGTTGAAGCAGTAGCCATGGCCAGAGGTGCCAACAAGGTTGGAAATAAGGGCACCAAGGGAAGCGAAAGTAAAGTTCCATTGAGAAATAACAATAATGGTGTGGAAAACTTACATGGGTTACTTCCATCCGAGATCGAACTTGCACAGTTTGCAGCTGATGTTGAAAGTTTACTGGGTAGGGGGCTAGAAAATGAGTGTATAGGAATGGAAGACTTGGGGTTGATTGATTGTAAAGAGGAAGAACAATCGAGGGAGTGTTCTGTGGGTAGTGAAAAAGTGAAGGTGGAGGAGGAAGAAAGAAGGGAAATGGCTGATGCTGCAATAGCTTGCAAGTTAGAGACAGATCAGATGGAGATGGGAGTTAGAGAGCCATTTGAATTTAGCTTTGATTATGACTCTCCTGAAACATGTGAAGAAGTGGAGGAGAAGGATAGGGAGAAGATTGGTTCAAATATAGCCAAAGAAATGAAGAATGGTGGAGAATTCAAAGGGAATAATCAGGGCAAGCGGAAGATTTTGTTGCAGCTAGATTATGAAGCAGTAATCTCCGCCTGGGCAAGCCAGAAATCTCCATGGACAACTGGTGATAAACCAGACTTTGACCCTGATGAGTACTGGCCTGATTGCATGGGGACATGTGGAATGGAGCTTCATCATGGTTATGGTGAAATGGGAGGATTTGGGTGTCACCCACCATTAATGGCAGACGGGGGGAGAGAGGCGAGGGTGTCAAGGTACAGAGAGAAGCGAAGGACGAGATTGTTCTCGAAGAAAATAAGGTACGAGGTTCGGAAACTGAATGCAGAGAAGAGACCCAGAATGAAAGGGAGGTTTGTGAAGAGGGCATCATTTGTAGCAGCAGCAGCACCACCACCCCCTGCTTTTCCGCTGCTAAACAAATAA 1395 0.476 MTSAKKVANAVGGKTARACDSCIRKRARWYCAADDAFLCQTCDSVVHSANSLARRHERVRLKTASYKSSDLTLPVDLNWAPSWHRGFTKKARTPRHGKHSAINQTAKAQDEPPTRNPFHLVPEVGSDESINSHEDNEEQLLYRVPIFDPFATEICSTPPSSVTSVEAVAMARGANKVGNKGTKGSESKVPLRNNNNGVENLHGLLPSEIELAQFAADVESLLGRGLENECIGMEDLGLIDCKEEEQSRECSVGSEKVKVEEEERREMADAAIACKLETDQMEMGVREPFEFSFDYDSPETCEEVEEKDREKIGSNIAKEMKNGGEFKGNNQGKRKILLQLDYEAVISAWASQKSPWTTGDKPDFDPDEYWPDCMGTCGMELHHGYGEMGGFGCHPPLMADGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRASFVAAAAPPPPAFPLLNK 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1502 464 MobiDBLite consensus disorder prediction 176 195 - -
Glsi09g1502 464 MobiDBLite consensus disorder prediction 180 195 - -
Glsi09g1502 464 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 447 - -
Glsi09g1502 464 Pfam CCT motif 403 445 IPR010402 GO:0005515
Glsi09g1502 464 SMART bboxneu5 14 61 IPR000315 GO:0008270
Glsi09g1502 464 ProSiteProfiles CCT domain profile. 403 445 IPR010402 GO:0005515
Glsi09g1502 464 CDD Bbox1_BBX-like 18 61 - -
Glsi09g1502 464 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Glsi09g1502 464 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
Glsi09g1502 464 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1502 Glsi-ChrGlsi09 11420967 11422723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1502 5 445 C2C2-CO-like Transcription Factor Family AT1G25440 44.912 5.18e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi09g1502 zf-B_box 2.3e-07 No_clan