Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1498 ATGTCGAGAAAACTTCGCATCATTTGTAACGACCCTGATGCCACAGACTCATCTTCAGATGAAGAAGAAGAGCGGATAAAGAAGCCACAAAGGATTAAAAAAATGGTTCACGAGCTCACTATTCCTTTTGTTTCAGGGAAGTCTAAACTATTTGAAGTTGAAGGCTCTGAGAGTGCCTCCAACTGCAATGAATGCCAACCCTCCAGCAAAAAGGTTTTGCGTTTGCCCAAAACCCCATCATCCAGGAGGCGTTCTTCTTCGAACTTCAGAGGTGTTCGGATGAGAAAGTGGGGTAAATGGGCTGCCGAGATTCGTGATCCTCTTAGGGGTATTCGTATCTGGTTGGGCACTTTCAATACTGCAGAAGAAGCTTCTCAAGCCTATGAAGCTAAAAGGATGGAATTTGAAGCCATGGTTGCTGCAGAAATGGCCAACTGTAAAAAGAGTATCTCTTGTTCTTCATCTGACAATTCTGCTTCTTCCGATAACTCGGAGAGCGTCGTTTCACATGCATCCCCACCTTCTGTTCTAGAAGTCTATACTTCATCTTCAGATTCCATTGGGAGTGATAAATTTCCGAGCAAAGAAGCTGCTGAGACCTCTGATTTGGACACTGAATCTGCAGGTTTACAAATTCCTCATATGAGTTTGTCAAAAGTGCCATTGCCACCACCATTACCATCTCCTCCTCCAGTTTGTTCAGAAGATCTGAACATGCTTGAGGTGGATTGGTTAATGGTAGATAATTTTGGGCAGAGTTTCAATGATCTTTGTGGTCTGGAAGACATACAAATTTGTGAGTTTGATGATAATGAGCCTAGTAAGCTTCCAGATTTCGATTTTGATGATTTTGGAGCCGATGAGTTTGCTTGTTGGACTGAGGAACTCCTCGATATACCGTGCGCATAA 909 0.4312 MSRKLRIICNDPDATDSSSDEEEERIKKPQRIKKMVHELTIPFVSGKSKLFEVEGSESASNCNECQPSSKKVLRLPKTPSSRRRSSSNFRGVRMRKWGKWAAEIRDPLRGIRIWLGTFNTAEEASQAYEAKRMEFEAMVAAEMANCKKSISCSSSDNSASSDNSESVVSHASPPSVLEVYTSSSDSIGSDKFPSKEAAETSDLDTESAGLQIPHMSLSKVPLPPPLPSPPPVCSEDLNMLEVDWLMVDNFGQSFNDLCGLEDIQICEFDDNEPSKLPDFDFDDFGADEFACWTEELLDIPCA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1498 302 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 2 194 - -
Glsi09g1498 302 MobiDBLite consensus disorder prediction 62 89 - -
Glsi09g1498 302 MobiDBLite consensus disorder prediction 151 190 - -
Glsi09g1498 302 MobiDBLite consensus disorder prediction 151 207 - -
Glsi09g1498 302 CDD AP2 88 130 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 Gene3D AP2/ERF domain 88 143 IPR036955 GO:0003700|GO:0006355
Glsi09g1498 302 ProSiteProfiles AP2/ERF domain profile. 88 147 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 SMART rav1_2 88 142 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 SUPERFAMILY DNA-binding domain 87 135 IPR016177 GO:0003677
Glsi09g1498 302 MobiDBLite consensus disorder prediction 1 28 - -
Glsi09g1498 302 PIRSF PTI6 226 294 IPR017392 GO:0003700
Glsi09g1498 302 PIRSF PTI6 1 193 IPR017392 GO:0003700
Glsi09g1498 302 Pfam AP2 domain 88 137 IPR001471 GO:0003700|GO:0006355
Glsi09g1498 302 MobiDBLite consensus disorder prediction 62 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1498 Glsi-ChrGlsi09 11385221 11386129 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1498 3 283 AP2-EREBP Transcription Factor Family AT1G68550 35.739 5.58e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi09g1498 AP2 1.1e-10 CL0081