Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1475 ATGTTTAGTGTAAAGTCGAGCAGTGTCGCTATTGTTCCTATTAACTTGCAGTATGGGACATTGAACTCGAACATTGGGTGTTCAGAGATTGCTTCAACAGGGGGAGGGTGTCTTGATACGGGGCAGAACCTGATGTACCAGAAAGGAAGCGCCATTCCCACCGCCATGCCTTTAGGGAACGGGCATATTGAGAATTGGGGTGATTCAGGAATGGTAGATAACAGCCAACACACTGATACTTCCACAGATGTTGACGCCGATGATAGAAACCAATGCAATAGAGTTCAACATGGGGCACTTGTGGTTGTGGATTCCGTGGATCAACCAAAGGCCAAAGCTGAAGACCAGAAGACTCTTCGTAGGCTTGCACAGAATCGTGAGGCTGCAAGGAAGAGTCGGTTAAGGAAAAAGGCATATGTACAGCAGCTGGAAAACAGTCGGCTCAGGCTTGCCCAATTAGAGCAAGAGCTCCAACGAGCACGGCAGCAGGGTATGCTTGTTGCTACTGGATTTCCAGGGGATCATGGCCATTCAATGGTTGGAAATGGTGCCTTAGCATTTGACATGGACTATGCTCGCTGGGTTGATGAGCATCAACAGCTGATCAATGACCTAAGATCGGCTGTTAATTCTCAAATGGGAGATAATGACCTACATCTTCTTGTCGACAGTGTTATGGCACATTATGATGAAGTGTTTAGGTTAAAGAGCATAGGGGCAAAAGCTGATGTATTTCACATGCTTTCGGGTATGTGGAAGACACCAGCAGAAAGATGTTTCATGTGGCTTGGTGGATTCCGATCATCAGAACTTCTTAAGATTGTCCGGAACCATCTTGAGCCGTTGACAGACCAGCAGTTGATGGGCATTTATAATCTGCAGCAGTCTTCACTGCAGGCTGAGGATGCTTTAACACAAGGCATGGATGCTTTGCAACAATCCCTTTCAGAGACACTTGCCTCTACCACCCTAGGTCCCACTGGTTCCGGAAATGTTGCTGGTTACATGGGCCAAATGGCAGTTGCAATGGGCAAGCTTGCCACCGTGGAGAATTTCCTTCATCAGGCTGATCTCTTGAGGCAACAAACTCTGCAACAGTTGCAACGAATCTTGACCACACGACAAGCTGCTCGTGCCCTTCTTGTCATAAATGATTACATTTCACGGCTCCGAGCACTTAGTTCTTTATGGTTAGCACGCCCTAGAGAGTAG 1212 0.4728 MFSVKSSSVAIVPINLQYGTLNSNIGCSEIASTGGGCLDTGQNLMYQKGSAIPTAMPLGNGHIENWGDSGMVDNSQHTDTSTDVDADDRNQCNRVQHGALVVVDSVDQPKAKAEDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLRLAQLEQELQRARQQGMLVATGFPGDHGHSMVGNGALAFDMDYARWVDEHQQLINDLRSAVNSQMGDNDLHLLVDSVMAHYDEVFRLKSIGAKADVFHMLSGMWKTPAERCFMWLGGFRSSELLKIVRNHLEPLTDQQLMGIYNLQQSSLQAEDALTQGMDALQQSLSETLASTTLGPTGSGNVAGYMGQMAVAMGKLATVENFLHQADLLRQQTLQQLQRILTTRQAARALLVINDYISRLRALSSLWLARPRE 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1475 403 PANTHER TRANSCRIPTION FACTOR TGA9 64 403 - -
Glsi09g1475 403 SMART brlzneu 113 166 IPR004827 GO:0003700|GO:0006355
Glsi09g1475 403 FunFam BZIP family transcription factor 116 165 - -
Glsi09g1475 403 Pfam bZIP transcription factor 116 155 IPR004827 GO:0003700|GO:0006355
Glsi09g1475 403 Coils Coil 136 163 - -
Glsi09g1475 403 CDD bZIP_HBP1b-like 117 169 - -
Glsi09g1475 403 SUPERFAMILY Leucine zipper domain 117 160 IPR046347 GO:0003700|GO:0006355
Glsi09g1475 403 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 120 135 IPR004827 GO:0003700|GO:0006355
Glsi09g1475 403 Pfam Seed dormancy control 202 276 IPR025422 GO:0006351|GO:0043565
Glsi09g1475 403 ProSiteProfiles DOG1 domain profile. 184 400 IPR025422 GO:0006351|GO:0043565
Glsi09g1475 403 Gene3D - 116 167 - -
Glsi09g1475 403 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 115 159 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1475 Glsi-ChrGlsi09 11188036 11191554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1475 6 403 bZIP Transcription Factor Family AT1G68640 66.585 9.52e-174 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Glsi09g1475 DOG1 9.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1475 09 11188036 11191554 Glsi09g1475 09 11188036 11191554 ECH