Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1467 ATGCAAACTCACTCTTTCTCCTCCTACAATAATATTTCCTCGTACGAAGCTGATGAGGTTGACGACGAAGAGTCCATTTCCCTCTCTCTTGGCCCTCCTGGCCAACACATTAACCCCAAGCTCTCCTCCTCTAACCACTCTGAACCTCTTCACAGCCGCCGCCGCCACCAAAACCTTGCCTCTAATGGTGTCACAGTTTCCCTCCATATTGGCCTTCCCTCCAGTGATAGCAAGCCAGATCATTTGGCTTCTGCTCCTACTCAGGCTCAATACTGGATCCCTTCTCCAGCTCAGATCCTTATTGGACCAACCCAGTTCTCTTGCTCAGTCTGCAACAAAACGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGGCATGGGTCACAGTACAGGAAAGGACCAGAATCATTGAGAGGGCAAAAGCCAGGTTCTTCAATACTGAGACTGCCTTGCTATTGCTGTGCTGAGGGATGCAAGAACAACATAGAGCACCCGAGGTCAAGGCCTCTCAAGGATTTCAGGACCCTTCAGACACACTACAAGAGGAAGCATGGAGCCAAGCCATTTGGGTGCAGGAAATGTGGGAAGCCTTTTGCTGTGAGAGGGGATTGGAGGACCCACGAGAAGAATTGTGGGAAGCTCTGGTTCTGCATTTGTGGTTCTGATTTTAAGCACAAGAGGTCCCTCAAAGACCATGTTCATGCTTTCGGCTACGGCCATGCTCCACACACTTTCGAGAGTATCACCGACCGGCTGCCCGGCGAAAATGAAGATCACGAAGAAGTAGAAGATGATGATAATAATGATGAAGATGTTGTATGCGGGAATCATGAAGTAAATTGTCATTTGAATGCCTAA 864 0.4873 MQTHSFSSYNNISSYEADEVDDEESISLSLGPPGQHINPKLSSSNHSEPLHSRRRHQNLASNGVTVSLHIGLPSSDSKPDHLASAPTQAQYWIPSPAQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGQKPGSSILRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVHAFGYGHAPHTFESITDRLPGENEDHEEVEDDDNNDEDVVCGNHEVNCHLNA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1467 287 FunFam Zinc finger protein WIP2 160 242 - -
Glsi09g1467 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Glsi09g1467 287 MobiDBLite consensus disorder prediction 250 271 - -
Glsi09g1467 287 SUPERFAMILY beta-beta-alpha zinc fingers 102 128 IPR036236 -
Glsi09g1467 287 Gene3D Classic Zinc Finger 150 238 - -
Glsi09g1467 287 MobiDBLite consensus disorder prediction 17 54 - -
Glsi09g1467 287 PANTHER ZINC FINGER PROTEIN WIP2 24 269 IPR043584 GO:0003700|GO:0010468
Glsi09g1467 287 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Glsi09g1467 287 Gene3D Classic Zinc Finger 105 128 - -
Glsi09g1467 287 SMART c2h2final6 106 128 IPR013087 -
Glsi09g1467 287 SMART c2h2final6 154 186 IPR013087 -
Glsi09g1467 287 SMART c2h2final6 191 211 IPR013087 -
Glsi09g1467 287 SUPERFAMILY beta-beta-alpha zinc fingers 176 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1467 Glsi-ChrGlsi09 11103581 11105222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1467 22 256 C2H2 Transcription Factor Family AT1G13290 71.488 3.00e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1467 None None None