Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1464 ATGGATGGAAGTAGTAGCATAGATGAGAGCACCACAACTGACTCAGTGTCAATATCCCTTCCTCCGGCGATCACTCCGCCGCCGTTCACCGTGACATCCCAGAAGTCTTCGCCGCCTCCGAATAGTCTCTGCCGTGTCGGCAGCGGCGCCAGCACTATCATGGACTCCGACAGCGGCATCGAAGCTGAGTCCCGGAAGCTCCCGTCGTCCAAATACAAGGGAGTCGTGCCCCAACCCAATGGACGCTGGGGTGCTCAGATTTACGAGAAGCACCAGCGCGTTTGGCTGGGCACTTTCAACGAGGAAGACGAAGCCGCCAGAGCATACGATATCGCCGCCCAGAGGTTCCGCGGTAAGGACGCTGTCACCAACTTCAAGCCTATCGCCGGCGCCCCCGAAGACGACAACGACGACATCGAGACGGCGTTCCTCAACTCGCATTCCAAAGCTGAGATTGTAGACATGCTGAGGAAACACACGTACAATGACGAACTCGAACAGAGCAAGCGCAACCACGGCCTGGCGGAAGGAAAGAGAAAGTCGCTGAAGGACGGTGGGGAAGCGGGCGTTGGAGCAGGCGCGTGCTTCGAGCGGTCCCAGAAAGCGCGTGAGCAGCTATTTGAGAAAGCTGTTACGCCGAGCGACGTGGGGAAGTTGAACCGGTTGGTGATACCGAAACAGCACGCGGAAAAGCACTTCCCGTTGCCAAGCGGAAGCGCTTCTTCCTGTACGGCGGCCAAGGGGTTGCTTTTGAATTTCGAGGACGTTGGAGGGAAAGTATGGCGGTTTCGCTACTCCTATTGGAACAGTAGTCAGAGCTACGTTCTAACCAAAGGGTGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCTGGTGATACGGTTAGCTTCCACAGGTCGATCGGACCGGACCAGCAACTCTACATTGACTGGAAAGCCCGGAATATCCAGGGAGGCGGCGGCGGCGGCGGAGTTGGTGATGGGGTTGGAGTTGAAGGGCTGTTCAACCCGGTCGGACCGGCGATAGAGCCGGTTCAGATGGTTCGGCTATTTGGGGTAAACATTTTGAAAATACCTGCTTCTGATGCTATTAGCGGGTGCTGCAACGGGAAGAAGAGAGAAATGGAACTGTTTACATTAGAGTTCAGTAAGAAGCCAAAGATAATTGGAGCTTTGTAA 1179 0.5539 MDGSSSIDESTTTDSVSISLPPAITPPPFTVTSQKSSPPPNSLCRVGSGASTIMDSDSGIEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPIAGAPEDDNDDIETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNHGLAEGKRKSLKDGGEAGVGAGACFERSQKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSGSASSCTAAKGLLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSIGPDQQLYIDWKARNIQGGGGGGGVGDGVGVEGLFNPVGPAIEPVQMVRLFGVNILKIPASDAISGCCNGKKREMELFTLEFSKKPKIIGAL 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1464 392 SUPERFAMILY DNA-binding domain 70 126 IPR016177 GO:0003677
Glsi09g1464 392 CDD B3_DNA 206 300 IPR003340 GO:0003677
Glsi09g1464 392 MobiDBLite consensus disorder prediction 1 20 - -
Glsi09g1464 392 ProSiteProfiles B3 DNA-binding domain profile. 207 315 IPR003340 GO:0003677
Glsi09g1464 392 SMART B3_2 207 315 IPR003340 GO:0003677
Glsi09g1464 392 MobiDBLite consensus disorder prediction 1 73 - -
Glsi09g1464 392 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Glsi09g1464 392 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Glsi09g1464 392 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 365 IPR044800 GO:0003700
Glsi09g1464 392 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Glsi09g1464 392 Pfam B3 DNA binding domain 207 311 IPR003340 GO:0003677
Glsi09g1464 392 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Glsi09g1464 392 Gene3D - 195 320 IPR015300 -
Glsi09g1464 392 MobiDBLite consensus disorder prediction 167 185 - -
Glsi09g1464 392 FunFam AP2 domain-containing protein RAP2.8 70 127 - -
Glsi09g1464 392 SUPERFAMILY DNA-binding pseudobarrel domain 205 300 IPR015300 -
Glsi09g1464 392 MobiDBLite consensus disorder prediction 35 58 - -
Glsi09g1464 392 MobiDBLite consensus disorder prediction 167 188 - -
Glsi09g1464 392 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1464 Glsi-ChrGlsi09 11082962 11084140 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1464 4 391 RAV Transcription Factor Family AT1G13260 59.278 2.32e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Glsi09g1464 B3 1.9e-27 CL0405