Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1459 ATGCTGGTTCGGAGGAGGGTGATGAGCTGGAGAAGGGTGACCAAATCTCTTCAAGCTCTGGTAGCGCATGGCTTACTCTTCACCTTCACGCTTCTACTCGTTCTCAAGCTTGACCGTGTCGTCTCTTGCTCATGGTGGATCATATTTTCACATCTATGGCTTTTTCATGCTGTCTTAGTACGAGGCCGGTTTTCCTTACCCGCTCCTTCAATGCCTCATGATCGCCATTGGGCTCCTTGTCATGCCATCATGGCAACGCCATTACTTGTTGCTTTTGAGCTACTTCTTTGCATACATCTTGAGAGCAGTTATGTTGTAAATTTAAAGATAGTCTTCTTACCCCTGTTGGCTTTTGAAGTGGCAATTTTGATTGATAACATCAGGATGTGTAAAACTTTGCTGCCTGGAGATGACGAAAATATGAGTGACGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCAATATCCATGGTCTTCTTTGTTGCTGCTACAGTATTTACTCTTCTTAAGATATGTGGTGATGTTGCTGCTCTCGGATGGTGGGATTTATTTATTAACTTTGGCATTGCAGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTACAATCCAACAATTCATGGAAATTGTAACATTACGGAACCATCACCATTTATTGTAAGATACCTAGACTGGGGTATCAGCTTAGATGAAGATAGGCAGCCAAGTGGGTTGTGCAATCTGCAGGACATTGGTGGGCATATTATGAAGATTCCCTTCATTTCTTTCCAAATAATGCTATTTATGCATTTAGAGGGAACACCTTCCAGTGCCAGAAATATTTCATTTCGGGTTATTTTTTCTCCCCTTTTTTTGTTGCAAGGAGCTGGGCTTTTATTTGCAGCATATAGATTAGTGGAAAAAATAGTTCTTTTACATCACAGTGGAGAAGTTCCTGGAAGATACTCAGCTGTAGCATCAAAAGCCCGTGATTGCTTTGGGTTCTTGCATCATGGGTCAAGGTTGCTAGGTTGGTGGTCAATAGATGAGACAAGTAGAGAGGAACGAGCTAGAATTTACTGTGCTGGGAGTTCTGGGTATAATACTTTCTCCCCTGATATGGTGAAGAAAATGCCTAGAGCAGATCTTGTTGAGGAGATTTGGAGACTACAAGCTGCAGTGAGTGAGCAGACAGAAGTTACAAAATTTAGCCAGCAGGAGTATGAAAGACTTCAAAATGAAAAGATCCTATGCAGAGTTTGCTTTGAAGAGCAGATAAATGTGGTCCTGATTCCTTGTAGGCATCACATTCTTTGTAGCACTTGCTGCGAAAAATGTACAAGGTGCCCTGTCTGCCGTGTCTACATTGAAGAACGGATGCCTATACATGACGTGGTCTAG 1386 0.4242 MLVRRRVMSWRRVTKSLQALVAHGLLFTFTLLLVLKLDRVVSCSWWIIFSHLWLFHAVLVRGRFSLPAPSMPHDRHWAPCHAIMATPLLVAFELLLCIHLESSYVVNLKIVFLPLLAFEVAILIDNIRMCKTLLPGDDENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKICGDVAALGWWDLFINFGIAECFAFLVCTKWYNPTIHGNCNITEPSPFIVRYLDWGISLDEDRQPSGLCNLQDIGGHIMKIPFISFQIMLFMHLEGTPSSARNISFRVIFSPLFLLQGAGLLFAAYRLVEKIVLLHHSGEVPGRYSAVASKARDCFGFLHHGSRLLGWWSIDETSREERARIYCAGSSGYNTFSPDMVKKMPRADLVEEIWRLQAAVSEQTEVTKFSQQEYERLQNEKILCRVCFEEQINVVLIPCRHHILCSTCCEKCTRCPVCRVYIEERMPIHDVV 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1459 461 ProSiteProfiles Zinc finger RING-type profile. 413 448 IPR001841 -
Glsi09g1459 461 Coils Coil 389 409 - -
Glsi09g1459 461 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 460 - -
Glsi09g1459 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 387 458 IPR013083 -
Glsi09g1459 461 Pfam Zinc finger, C3HC4 type (RING finger) 411 453 - -
Glsi09g1459 461 Pfam Transmembrane Fragile-X-F protein 35 288 IPR019396 -
Glsi09g1459 461 SUPERFAMILY RING/U-box 404 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1459 Glsi-ChrGlsi09 11020126 11027145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1459 8 460 C3H Transcription Factor Family AT1G73950 64.425 0.0 604