Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1458 ATGAAAAGGGAGGAAGATCATGGACACTTCCAGAACTATCAAGAGCAGCTTCTGATGATGCAGCAGCAGCAACAAAATAGTGATAATAATATGAATATCTATGGAGGTAGCAGTGGTGGGAGATCGTCAGGAGGATCATTGATGTTTCCAGAAGCTTCTCCAATCTTCCAGCCATGGTCTATCCCTCCGGTTCACCCATTCAACCCGGCGGCCCATGACCCGTTTCTTGTCCCTCCGCCACCTCCAGCACCCTATGCTAGTTTGTTTAATAGAAGGGTTCCTTCTCTGCAATTTGCATATGAGGGTCCATCTTCTGATCACCACCATCTCCGGATCCTATCCGATGCCCTTGGACCCGTGGTTCAACCCGGCTCTGCGCCGTTTGGAGCTCTCCAAGCCGAGCTGGGAAAGATGACGGCTCAGGAAATTATGGATGCTAAGGCTCTGGCAGCTTCTAAGAGTCATAGTGAAGCTGAAAGGAGACGCCGAGAGAGAATCAATAACCATCTTGCCAAGCTTCGTAGCTTATTGCCCAGTACAACCAAAACGGATAAAGCTTCATTGCTAGCAGAAGTGATTCAACACGTGAAGGAACTGAAGCGCCAAACATCATTAATAGCAGAAACAAGTCCAGTGCCAACGGAGGTTGATGAGCTAACAGTGGATGCTGCTGATGAGGATGGAAAGTTCATAATCAAAGCCTCATTTTGCTGTGAAGATAGATCTGATCTCTTGCCAGAACTCATCAAAACCTTGAAAGCTTTAAGGCTAAGAACCCTTAAAGCTGAGATCACTACGCTTGGTGGGAGAGTCAAAAACGTCTTGTTCATAACTGGAGAAGAAGATTCGTCTAGTGGCAGTGAGGACTCGTTGCTACAGCAGCATTGTATTAGCTCAATACAAGAAGCTCTAAGGGCAGTGATGGAGAAGAATGGAGGTGATGATTCCAATGCCTCTGGGAATGTTAAGAGACAAAGGACTAACATCAATATCCTTGATCATAGGTCTTTATAA 1014 0.4615 MKREEDHGHFQNYQEQLLMMQQQQQNSDNNMNIYGGSSGGRSSGGSLMFPEASPIFQPWSIPPVHPFNPAAHDPFLVPPPPPAPYASLFNRRVPSLQFAYEGPSSDHHHLRILSDALGPVVQPGSAPFGALQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDAADEDGKFIIKASFCCEDRSDLLPELIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEDSSSGSEDSLLQQHCISSIQEALRAVMEKNGGDDSNASGNVKRQRTNINILDHRSL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1458 337 CDD bHLH_AtAIG1_like 145 223 - -
Glsi09g1458 337 FunFam transcription factor bHLH30 145 208 - -
Glsi09g1458 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 206 IPR036638 GO:0046983
Glsi09g1458 337 PANTHER TRANSCRIPTION FACTOR BHLH30 20 328 IPR045847 GO:0003700|GO:0006355
Glsi09g1458 337 SMART finulus 156 205 IPR011598 GO:0046983
Glsi09g1458 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Glsi09g1458 337 Gene3D - 145 206 IPR036638 GO:0046983
Glsi09g1458 337 Pfam Helix-loop-helix DNA-binding domain 153 199 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1458 Glsi-ChrGlsi09 11013679 11015837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1458 5 326 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 58.944 3.79e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1458 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1458 09 11013679 11015837 Glsi09g1458 09 11013679 11015837 ECH