Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1424 ATGGAAAAAACTGGGGAGGTAGCTTTCTTTTGTTTAGCTTTTTTCTCCTTCTGGAGTTCAGTATCTGCTTTGCTTTCTCCTTCAGGCGTCAACTATGAAGTGCAAGCTCTGATGAGCATTAAAGCTTCTTTGGTGGATCCTCATGCTGCCCTCTATAACTGGGATGGTGATGCTGTGGATCCTTGTAGCTGGGCCATGGTCACTTGTTCTCCTGATCGTTTTGTGATTGCCCTAGGAATTCCAAGCCAGAACATATCTGGTACTCTCTCACCAAGCATTGGAAACCTAACAAATCTCCAGACTGTGCTCTTGCAGGATAATTTTATATCTGGACCAATTCCCTCAGAGTTTGGGAGGCTCCAAAAACTTGAAACTCTTGATCTTTCTGATAATTCCTTCACTGGTCAACTTCCTGATAGTCTATCCCAAATGAAGAGTCTCCATTATTTGCGGTTAAATAATAATACTCTTTCTGGAACAATTTCATCATCTTTGGCGAATATGACTCAGTTGACTTTTTTGGATATCTCTTATAATAACTTGAGTGGACCTGTACCCAGAATAAATGCAAAAACATTCAATATTGAAGGCAATCCCCAGATTTGTGCCACTGAAACTGAGCAAAACTGCTTTAGAACACTACTTTTTACTGCCTTGAATAACTCTCAAGATGCACAATCCTCTGGTAGACCTAAAACTCACAAAGCTGCCTTGGCGTTTGCTTCAAGCCTAAGCTGTATCTGCCTACTAATTGTTGGCTTTGGTTTCATCCTCTGGTGGAGACAAAGATATAGGAAGCAAAATTTCTTCGATGTCAATGGACAACTTCGTGAAGAAATTTGCCTTGGGAACCTCAACAAGTTTCATTTCAGAGAACTTCAACTAGCTACAAGTAACTTTAGCAGCAAGAACTTGATTGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGGTATCTCTCAGATGGTACAGTTATAGCAGTAAAAAGGCTAAAAGATGGGAATGCCATTGGAGGTGAGATCCAATTCCAAACTGAAGTTGAGATGATCAGCTTAGCAGTGCATCGGAACCTCCTTCGCCTCTATGGATTTTGTATGACAGCCACCGAGAGGCTCTTGGTTTATCCCTACATGTCCAATGGTAGCGTTGCTTCTCGTCTTAAAGCCAAGCCTGCACTAGACTGGGGTACGAGGAAGAGGATAGCCTTAGGAGCCGCAAGGGGGTTGCTGTATTTGCACGAACAGTGTGACCCCAAGATTATTCACAGGGATGTGAAGGCTGCAAATATCTTGCTTGATGATTATTGTGAGGCTGTTGTAGGGGATTTTGGGTTGGCAAAGCTGCTAGATCACCATGATTCTCATGTGACAACAGCTGTGAGAGGCACTGTAGGGCACATAGCCCCAGAGTATCTCTCAACAGGCCAGTCCTCTGAGAAAACAGATGTGTTTGGGTTTGGAATCCTTCTGCTTGAACTAATTTCTGGCCAAAGAGCACTAGAATTTGGCAAAGCAGCAAACCAAAAAGGAGCCATACTTGACTGGGTGAAGAAGATCCATCATGAGAAGAAACTTGACTTGTTAGTGGACAAGGATCTGAAGAACAACTATGATAGAATTGAGCTTGAAGAAATCGTTCAAGTAGCTCTTTTGTGCACTCAATACCTTCCAAGTCACAGACCCAAGATGTCTGAAGTGGTTCGGATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGCAGAGGAAATGAACTCTCTTCTTCAGAACGCTACTCTGATCTTACTGATGACTCTTCTTTGCTTGCCCAGGCAATGGAGCTTTCTGGACCAAGGTGA 1863 0.4305 MEKTGEVAFFCLAFFSFWSSVSALLSPSGVNYEVQALMSIKASLVDPHAALYNWDGDAVDPCSWAMVTCSPDRFVIALGIPSQNISGTLSPSIGNLTNLQTVLLQDNFISGPIPSEFGRLQKLETLDLSDNSFTGQLPDSLSQMKSLHYLRLNNNTLSGTISSSLANMTQLTFLDISYNNLSGPVPRINAKTFNIEGNPQICATETEQNCFRTLLFTALNNSQDAQSSGRPKTHKAALAFASSLSCICLLIVGFGFILWWRQRYRKQNFFDVNGQLREEICLGNLNKFHFRELQLATSNFSSKNLIGKGGFGNVYKGYLSDGTVIAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTATERLLVYPYMSNGSVASRLKAKPALDWGTRKRIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHHDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAANQKGAILDWVKKIHHEKKLDLLVDKDLKNNYDRIELEEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1424 620 SUPERFAMILY L domain-like 31 195 - -
Glsi09g1424 620 SUPERFAMILY Protein kinase-like (PK-like) 280 570 IPR011009 -
Glsi09g1424 620 ProSiteProfiles Protein kinase domain profile. 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1424 620 MobiDBLite consensus disorder prediction 587 611 - -
Glsi09g1424 620 Pfam Protein kinase domain 301 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1424 620 SMART serkin_6 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1424 620 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Glsi09g1424 620 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Glsi09g1424 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 580 - -
Glsi09g1424 620 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
Glsi09g1424 620 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Glsi09g1424 620 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Glsi09g1424 620 Gene3D Transferase(Phosphotransferase) domain 1 377 589 - -
Glsi09g1424 620 Pfam Leucine rich repeat 97 157 IPR001611 GO:0005515
Glsi09g1424 620 FunFam Somatic embryogenesis receptor-like kinase 1 377 589 - -
Glsi09g1424 620 MobiDBLite consensus disorder prediction 577 620 - -
Glsi09g1424 620 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Glsi09g1424 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1424 Glsi-ChrGlsi09 10671756 10676032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1424 8 620 Receptor kinase-like Gene Family AT5G16000 73.600 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Glsi09g1424 Pkinase 1.7e-43 CL0016