Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1399 ATGCAGTGTTTGATTCAGGTTGAAGATTTCCCAGAGCTCCGCTTAGGAGATCTCCAATCCCACGTTGATTTGGATGAGATTTGGTCGCCTAGTAAGGGTCGAGTTTGTAATGGCTTCTTAGATACAAAGTGGTGTGGTAACTGAAGTAGCTTTGGAAATGGTAGCTGCCAAACTCGTGTGAGCTTTAGTAAATCTTTTGCGTACTTGGGTCTTGTTTCGGCGCTTTTGCAATTTTCCAGCTCATTAAGTGAAGTTGGTCTCTCTCTCTGTTTACTTCTTCTAAGCTGCTTCCCTTGTAAATTGGCTTCATATGCTTCCAACTTTTTCTTTTCTTTTCTTTTGGATGGATTCAGAGTTCGAAAAGTCTCTTTGTTCTTTCAGTTTCATAAGAACGGAGAGTTGGATATGTGTGACAAAGAAAGATTTGAGCTAGACAGAAACGAGGATCCTATGAGTTATTCAACTTGTTTACCCTCGGATTGGAGATTTGGAGGGGCTAATCTTGCAAATACATCAGTGGGTTTGGTTCCCTCTGCTGCCATGGTGGACTCATATGTTTCAAACTTCTGGGATCATCCCACCAATTCCCAGAACCTGGGACTATGCGACATTAATGTCCAGAACAATGGTATCTCCTCAAACACAATTGGAAACAGAAAAGATGGCCTTGCCTTTTCAAGAGCTGATCATGATAGAACACTTGAAATGGGTTGGAACCCAGCAAATTCTATTTTGAAAGGGGATGCTTTCTTTCCAATTGGACCAGAAACATTTCCACAGAGTTTATCTCAGATTCCCACTGATTCTGGATTTATTGAGCGTGCTGCCAGATTCTCATGCTTCAGTGGAGGGAATTTTGGTGATATGGTGAACTCTTTTGGGATTCCTCAATCCATGGGTCGGAACACTAGGAGTGCAGGGACGATGCATGGAGCACAAGATGCTCTTGCAGGCCATGGGTTAAAATCAGTACCTGGAGGACAATCTCAAGAAAGTGATTTGAATGCAGGTGACGCTGCAAAAGATGTGTCTCTATCTATTGAGCATCTGGCTGCTAAAGAAAGCCCATTCCAGAATGACAAAAGAAGCCAAAGCCGTGTAACATCTCAAGATGAAGCAAAACAAACTCTTGGTGGGCCTGTTAATGAGTCTGATAGAGCAGAATCAAGTGGTGATGATGATGCTGGTGGTCAAGATGATATGCCAATGTTGGAGGATACAAGTGGGGAACCTTCTATCAAAGTAATGAACTCAAAGAAAAGGAAAAGAAGAGGGCAGGATTCTGATATTGAAAAAGCCAATGGAGCTCCTGAACTACCAAGTGAAGCTGCAATGGACAATTCTGAGAGTCAACTGAAGAGAGACCAAAATCCAACTTCAACAACCAAGGCTTCTGGGAAGAATACCAAACAGGGGTCTCAAGCGTCTGATCCACCAAAGGAGGAATACATACATATTCGGGCTCGCAGAGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGGAGGGAAAAGATCAGTGAAAGGATGAAATTTCTTCAAGACCTTGTACCTGGATGCAGCAAGGTCACTGGCAAGGCCGTGATGCTAGATGAAATCATTAACTATGTACAGTCACTTCAACGACAGGTTGAGTTTTTGTCTATGAAACTTGCAACTGTAAATTCAAGGCTGGATTTTAATATTGAAGGACTTCTTGCTAAAGATATTCTTCAGCAACGGCCTGGCCCTTCATCTGCATTCGGGTTTTCTCCAGAAATGCCCATGGTTTTTCCTCCTTTTCATCCATCTCAACCAGCACTTCTGCAGTCAACTCTTCCTGGCCTAGCAAACTCATCTGATATACTTCGGAGAACCATTCATCCACAGTTAACTCCCCAGCATAATCAGCTACCTGATGTGTGGGAGGATGAACTTCACAATGTTGTACAGATGAGTTTTGCAACAACTGCTCCACTGAGTAGCCTAAATGTGGATGGTAAATTTTCCCTAAACCCGTGGTGTTTGAACCCAAAGGAAAATGAAGACTACAACCACAAGGAGGAAAAGCACTTTAGCTCCTGTAGTTCCAAACCAAAGGCCTTGCATTTGATAAAGTGCTCGCTAGCACCTACTCCCAGCAGAAAAGGGGGAAGGGAAGAAGAAGAAGCATCATCAAGAGCAGCAACCATGACGATGGATCAGAAGAAGACCCAGAACAATTCCAGGGGAAAAAATCAACTTATTCACGAGCAATCGCCTTTGCTACCCAATGATAAAGATGATGAGGGGGCATCTTTTACTGGGTCAGTGTTCAATTTATCTACTACCATTATTGGTGCTGGGATTATGGCCTTACCTGCCGCCATGAAAGTTCTGGGACTGGGTTTGGGAATCGTTGCCATAGTCTTTCTTGCGTTGCTCACAGAGACTTCCTTGGAGATTCTGATGAGGTTTAGCAGAGTAGGGAAGGCTGAGACTTACGGAGAGGTGATGAGGTATGCCTTTGGAAGTGTTGGAAGATGGGTGTTCCAGATTGCCGTTCTTCTTAACAATTTTGGCATACTCGTCGTCTACGTGATTATAATAGGTGATGTGCTATCTGGAACATCTTCAAGTGGAATTCATCATTCTGGTGTATTGGAAGGATGGTTTGGTGAATACTGGTGGACTGGGCGTACTTTTATTCTTCTTGTGGCAACCCTATTTGTATTTACCCCATTGGCATTCTTTAAGCGGATAGATTCATTGAGATATACCTCTGCTTTAGCAGTGGCACTGGCAATTGTGTTTCTAGTCATAACTGCCGGAATAACATTTATTAAAGTTTTTAATGGCAGCATTGCCAGGCCCAGGTTGCTCCCTAATGTCACTGATTTTACATCTGCATGGAAGCTCTTTACAGCAACCCCTGTTCTTGTGACAGCATATGTCTGCCATTACAACGTGCATACGATAGACAATGAGCTAGGAGACCCTTCCTTGATACAGCAAGTTGTGCGTGCGTCACTGGCTCTATGTTCTAGTATCTATATACTTACAGCCTTATTTGGGTTTCTTCTATTTGGCGAGTCAACTCTTGATGATGTGCTCGCCAACTTTGATACCGACCTTGGCATCCCTTACAGCAGCCTGCTCAATGACATTGTTCGCCTCAGCTATGCCCTCCATCTCATGCTTGTTTTCCCAGTTATCTTCTTTTCACTGCGCTTCAATTTAGATGATCTCCTCTTTCCTTCAGCTAGGTCATTGGCCTTAGACAACTTTCGGTTCGTGTTGATAACCACTGGACTCATTTCCTTTGTATATGTGGCTGCAAATTTCGTACCTAGCATTTGGGATGCTTTTCAATTCACTGGAGCAACTGCCACTGTTTGCCTGGGGTTCATTTTTCCTGCTGCAATTGCTCTAAGGGATCCTCATGGCATTGCATCAAAGAAAGACAAAATTTTATCCATTGTCATGATTGGTCTTGCCGTGTTCTCAAATGTGGTGGCCATATACAGTAACGCTAGCGCTCTGTTCAGAAAACATGTTGATTCTCATGAATGA 3537 0.4337 MQCLIQVEDFPELRLGDLQSHVDLDEIWSPSKGRVCNGFLDTKWCGNXSSFGNGSCQTRVSFSKSFAYLGLVSALLQFSSSLSEVGLSLCLLLLSCFPCKLASYASNFFFSFLLDGFRVRKVSLFFQFHKNGELDMCDKERFELDRNEDPMSYSTCLPSDWRFGGANLANTSVGLVPSAAMVDSYVSNFWDHPTNSQNLGLCDINVQNNGISSNTIGNRKDGLAFSRADHDRTLEMGWNPANSILKGDAFFPIGPETFPQSLSQIPTDSGFIERAARFSCFSGGNFGDMVNSFGIPQSMGRNTRSAGTMHGAQDALAGHGLKSVPGGQSQESDLNAGDAAKDVSLSIEHLAAKESPFQNDKRSQSRVTSQDEAKQTLGGPVNESDRAESSGDDDAGGQDDMPMLEDTSGEPSIKVMNSKKRKRRGQDSDIEKANGAPELPSEAAMDNSESQLKRDQNPTSTTKASGKNTKQGSQASDPPKEEYIHIRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNSRLDFNIEGLLAKDILQQRPGPSSAFGFSPEMPMVFPPFHPSQPALLQSTLPGLANSSDILRRTIHPQLTPQHNQLPDVWEDELHNVVQMSFATTAPLSSLNVDGKFSLNPWCLNPKENEDYNHKEEKHFSSCSSKPKALHLIKCSLAPTPSRKGGREEEEASSRAATMTMDQKKTQNNSRGKNQLIHEQSPLLPNDKDDEGASFTGSVFNLSTTIIGAGIMALPAAMKVLGLGLGIVAIVFLALLTETSLEILMRFSRVGKAETYGEVMRYAFGSVGRWVFQIAVLLNNFGILVVYVIIIGDVLSGTSSSGIHHSGVLEGWFGEYWWTGRTFILLVATLFVFTPLAFFKRIDSLRYTSALAVALAIVFLVITAGITFIKVFNGSIARPRLLPNVTDFTSAWKLFTATPVLVTAYVCHYNVHTIDNELGDPSLIQQVVRASLALCSSIYILTALFGFLLFGESTLDDVLANFDTDLGIPYSSLLNDIVRLSYALHLMLVFPVIFFSLRFNLDDLLFPSARSLALDNFRFVLITTGLISFVYVAANFVPSIWDAFQFTGATATVCLGFIFPAAIALRDPHGIASKKDKILSIVMIGLAVFSNVVAIYSNASALFRKHVDSHE 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1399 1178 MobiDBLite consensus disorder prediction 723 748 - -
Glsi09g1399 1178 MobiDBLite consensus disorder prediction 297 504 - -
Glsi09g1399 1178 PANTHER AMINO ACID TRANSPORTER 751 1157 - -
Glsi09g1399 1178 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 490 561 IPR036638 GO:0046983
Glsi09g1399 1178 MobiDBLite consensus disorder prediction 703 757 - -
Glsi09g1399 1178 Pfam Helix-loop-helix DNA-binding domain 495 543 IPR011598 GO:0046983
Glsi09g1399 1178 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 492 542 IPR011598 GO:0046983
Glsi09g1399 1178 SMART finulus 498 548 IPR011598 GO:0046983
Glsi09g1399 1178 Pfam Transmembrane amino acid transporter protein 759 1163 IPR013057 -
Glsi09g1399 1178 CDD bHLH_AtBPE_like 482 567 - -
Glsi09g1399 1178 Gene3D - 489 563 IPR036638 GO:0046983
Glsi09g1399 1178 MobiDBLite consensus disorder prediction 444 476 - -
Glsi09g1399 1178 MobiDBLite consensus disorder prediction 354 368 - -
Glsi09g1399 1178 Coils Coil 539 559 - -
Glsi09g1399 1178 FunFam Basic helix-loop-helix transcription factor 489 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1399 Glsi-ChrGlsi09 10365286 10379992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1399 734 1173 Amino Acid or Auxin Permease AAAP Family AT3G30390 64.206 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1399 Aa_trans 3.1e-59 CL0062