Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1386 ATGAGAGCAGGGAAAAGTCATCAGGAAGACGAGGAGTACGAGGAGGAGGAGTTCGGTTCTAAGAAAGAAGGCCCTTCGTCTAGGCCTAATAGTAATGGTACCAACAAAGATGCAACAGCTATTGATAAGGCTAGTGCAATAAGATCAAAACATTCAGTAACTGAGCAGCGGAGAAGGAGCAAGATAAATGAGAGATTTCAGATATTGAGGGATCTCATACCTCATAGTGATCAAAAGAGGGACACAGCATCATTCCTATTAGAGGTGATTGATTATGTCCAGTACTTACAGGAGAAAGTGCAAAAGTATGAAGGCTCATATCAAGGTTGGAGTCAGGAGCCAACAAAGTTGATGCCATGGAGAAACAGTCATTGGCGTGCCCAAAGTTTTGTTGGCCAGCCTCAACCTGTGAAGAACGGTTTGGGTCCAATATCACCTTTTCCTGGGAAGTTTGATGAAGGCAACCGTAGTGTCTCTCCAACTATGCTTAGTGGCTCCCAGAATATGATAGATCCTGATCAGAGCAGTAGTATTGTCAGCAAAACAGCAGAGAGGCAACCTGAGTCAGCAAGTAGGGGAGTACCTCTGCTTATGCCGATGCATTCAAATATGTCTGTTCCTGTTAGAAGTGATGATATTGGTGTACATGCTCATCCTCTGCAGGGGCCTTTTTGTGATGCCCTATTAACTGAATGTCCAGCTACTAGTGAACCCCAAAACCAACAGGATGAGCTGACAATTGAAGGAGGAACAATTAGCATCTCAAGTGTATACTCCCAAGGATTGTTGAACAATTTGACTCAAGCTCTACAGAGTGCTGGTTTAGATCTGTCAGAGGCTAGCATCTCAGTTCAGATTAATCTTGGGAAACAGGCAAACAAAGGACCAAGCTGTGGGACATCTACTCCCAAGAATCATGATAATCCATCTTTTAGCAATCAAGCAATTGCACATTTTAGAGATGCAAGCAGTGGCGAAGACTCAGATCAAGCTCAAAAACGTTTGAAAACATAA 1014 0.4339 MRAGKSHQEDEEYEEEEFGSKKEGPSSRPNSNGTNKDATAIDKASAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIDYVQYLQEKVQKYEGSYQGWSQEPTKLMPWRNSHWRAQSFVGQPQPVKNGLGPISPFPGKFDEGNRSVSPTMLSGSQNMIDPDQSSSIVSKTAERQPESASRGVPLLMPMHSNMSVPVRSDDIGVHAHPLQGPFCDALLTECPATSEPQNQQDELTIEGGTISISSVYSQGLLNNLTQALQSAGLDLSEASISVQINLGKQANKGPSCGTSTPKNHDNPSFSNQAIAHFRDASSGEDSDQAQKRLKT 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1386 337 Pfam Helix-loop-helix DNA-binding domain 48 97 IPR011598 GO:0046983
Glsi09g1386 337 MobiDBLite consensus disorder prediction 163 187 - -
Glsi09g1386 337 MobiDBLite consensus disorder prediction 1 61 - -
Glsi09g1386 337 MobiDBLite consensus disorder prediction 24 39 - -
Glsi09g1386 337 FunFam BHLH domain class transcription factor 44 116 - -
Glsi09g1386 337 MobiDBLite consensus disorder prediction 322 337 - -
Glsi09g1386 337 MobiDBLite consensus disorder prediction 163 195 - -
Glsi09g1386 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 119 IPR036638 GO:0046983
Glsi09g1386 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Glsi09g1386 337 MobiDBLite consensus disorder prediction 291 319 - -
Glsi09g1386 337 CDD bHLH_AtBIM_like 45 121 - -
Glsi09g1386 337 Gene3D - 44 117 IPR036638 GO:0046983
Glsi09g1386 337 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 4 337 IPR044295 GO:0003700|GO:0006351|GO:0046983
Glsi09g1386 337 SMART finulus 52 102 IPR011598 GO:0046983
Glsi09g1386 337 MobiDBLite consensus disorder prediction 291 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1386 Glsi-ChrGlsi09 10233461 10239329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1386 1 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.572 5.98e-114 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi09g1386 HLH 2.3e-13 No_clan