Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi09g1370 | ATGAGAGTCCTTCCATCCCACAACCCACAATCATCAACTTCCAATGGAGAAGCTGATACAGTATCTTTGAGATATGGTGCAGCTGAATCCATCTATTTCAGTGGACCAGCAACAACCAAACAAGAAAAATCTGAAGTTGCAATTGTTCATGTATCTGATTCATCAAATGAGGATGTCTGTCCCACATGTTTTGAAGGATATACTGTTGAGAATCCTAAGATTGCAGCAGAGTGCTCTCACCATTTCCACCTTAGCTGTATATATGAATGGAGGGAGAGAAGTGAAACCTGTCCATATTGTAGACAGGTTATGATATTTGGTGAAATGCTTTGA | 333 | 0.3994 | MRVLPSHNPQSSTSNGEADTVSLRYGAAESIYFSGPATTKQEKSEVAIVHVSDSSNEDVCPTCFEGYTVENPKIAAECSHHFHLSCIYEWRERSETCPYCRQVMIFGEML | 110 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1370 | 110 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 25 | 105 | IPR013083 | - | |
| Glsi09g1370 | 110 | SMART | ring_2 | 60 | 100 | IPR001841 | - | |
| Glsi09g1370 | 110 | ProSiteProfiles | Zinc finger RING-type profile. | 60 | 101 | IPR001841 | - | |
| Glsi09g1370 | 110 | Pfam | Ring finger domain | 59 | 101 | IPR001841 | - | |
| Glsi09g1370 | 110 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 14 | 107 | - | - | |
| Glsi09g1370 | 110 | SUPERFAMILY | RING/U-box | 54 | 106 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi09g1370 | Glsi-ChrGlsi09 | 10091617 | 10092798 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi09g1370 | 27 | 108 | C3H Transcription Factor Family | AT5G38895 | 55.422 | 8.63e-29 | 104 |