Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1366 ATGGAAGACAAACTTACCATGGACTTGGCTCCCCCACCTTCTGAGCACCTCTGCTATGTCCGTTGCAACTTCTGCAACACCGTTCTTGCGGAGCAGGGATTTTACGGTGATTTTAAGAAGGGACAGACATCGTCTTCATCGTCCTCGTCTACAACATCTGGCGAGCCAGTGTCCCCAAAAGCAGCAACGTTTGTTGTAAAACCACCTGAGAAGAAACACCGACTCCCATCTGCTTACAATCGTTTCATGAAAGAGGAGATACAGCGCATTAAAGCAGCCAACCCTGAGATTCCACACCGAGAGGCTTTCAGCGCTGCGGCCAAAAATGTAACTATCTTTCTTTCCAGTTTCGACTTTAGATTTGAAGGAATGAGAAAGCCATGGCAATGGAAATCTAGCTATATAGTAGCTGGAGAAAACTGGAGGAAGCAAATTATGTAG 441 0.4626 MEDKLTMDLAPPPSEHLCYVRCNFCNTVLAEQGFYGDFKKGQTSSSSSSSTTSGEPVSPKAATFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVTIFLSSFDFRFEGMRKPWQWKSSYIVAGENWRKQIM 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1366 146 MobiDBLite consensus disorder prediction 39 70 - -
Glsi09g1366 146 SUPERFAMILY HMG-box 57 107 IPR036910 -
Glsi09g1366 146 MobiDBLite consensus disorder prediction 39 58 - -
Glsi09g1366 146 PANTHER PROTEIN YABBY 6-RELATED 45 115 IPR006780 GO:0007275
Glsi09g1366 146 Pfam YABBY protein 47 112 IPR006780 GO:0007275
Glsi09g1366 146 Gene3D High mobility group box domain 59 112 IPR036910 -
Glsi09g1366 146 CDD HMG-box_SF 74 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1366 Glsi-ChrGlsi09 10054048 10056388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1366 1 109 C2C2-YABBY Transcription Factor Family AT1G69180 48.026 4.50e-30 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Glsi09g1366 YABBY 2.8e-27 CL0114