Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1363 ATGCCCAGCTCGAGGCAATCCTTCTTCATCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTGCTTTGTATCATTCTCTTCCACGCTGCTTTTCTCTATGGCTTAGCCTTCTCTGCAAATCATGAAGCCTATGTCCTATTCTCCTGGCTTCATAGCTCTGCGTCACCATCACCTCCATCTTTCTCCAACTGGAACATCCTTGACTCCGACCCATGCAATTGGACCTCCATAACATGCTCCCCCCAAGGTTTTGTCACTGAAATCAATATACAATCCATACCTTTAGAGCTTCCCCTTCCTTCCAATCTCTCCTCCTTGCTCTATCTTCAGAAACTAGTCATTTCTGATGCCAATCTCACTGGAACCGTCCCTGCTAACATTGGCGATTGCTCTCCCCTTACTGCCATTGACCTTAGCTCCAATAACCTCATAGGTTCCATCCCTGCAAGTATTGGTAAACTCCAAAACTTGGAGAGCTTGTCTCTGAACTCCAACCAGCTTACTGGAAAAATCCCACTTGAGCTAAGCAATTGCATCAGCCTAAAAACTCTTGCGCTCTTTGATAATCAACTAGGTGGAGCTATCCCACCTGTGCTAGGAAAGTTGTCAAAACTTGAGGTTCTGAGAGCAGGGGGAAACAAAGACATAGTTGGGAATATTCCTGAAGAGCTTGGAGAATGCAGCAATTTGACTGTGTTGGGGCTGGCTGATACTGGCATATCAGGTTCATTGCCAGCTTCACTGGGGCAGCTTAGAAAGCTTCAGACTTTGTCTATCTATACCACAATGCTATCTGGTGAAATCCCACCGGAGTTAGGTAACTGCTCTGAACTTGTTGATTTGTTCCTGTATGAAAATAGTCTATCAGGTTCTATCCCATCTGAGCTAGGTAAGCTCCAAAAGCTGGAACAGTTATTTTTATGGCAAAATGGTCTAGTGGGGGCTATCCCGGAAGAGATTGGGAACTGTACAAGCTTGAGAAAAATTGATCTCTCTTTAAACTCTCTATCTGGAACCATACCTTTGTCTTTGGGGGGTCTTTTGGAAATTGAAGAGTTTATGATCAGTGATAATAATGTGTCTGGTTCAATACCTTCCAGTCTTTCAAATGCCTCATTTCTGCAACAGTTGCAAGTTGACACAAATCAGCTCTCAGGTTTGATCCCCCCAGAGCTTGGGAGGTTATCAAAGCTCATAGTTTTCTTTGCTTGGCAGAACCAACTTGAAGGAAGCATTCCTTTCACTTTGGCAAACTGTAGTAACCTGCAAGCACTAGATTTGTCTCGCAATGCACTTACTGGTAGCATTCCTATTGGCCTATTTCAGCTTCAAAATCTTACAAAACTGCTTCTGATTTCCAATGATATTTCGGGTTCAATACCATCAGAAATAGGCAGTTGTAGCTCTCTCATAAGGCTAAGGCTTGGAAACAATAGGATAACTGGGGAGATCCCTAAGACAATTGGCAGTCTCAAAAGCTTGAACTTTTTAGATCTCTCTGAGAATCGCCTTTCTGGGCAAGTCCCAGACGAGATTGGCAGCTGCACTGAATTGCAAATGATAGATTTCAGCAGCAACAGCTTAGAGGGTCCATTGCCTGATTCTTTGTCAGCGCTATCTGCACTCCAGGTATTTGATGCATCCTCCAACAAGTTTTCGGGCCACATACCAGCAAGTTTGGGTCGTCTTGTTTCACTGAATAAGCTAATCCTGGGCACAAACTTATTTTCTGGGTCAATTCCTGCATCATTGAGCCTATGTTCAAGTCTCCAACTTCTTGATCTTAGTGGAAATGAGCTCACTGGGAGCATTCCAGCAGAGCTGGGTCATATAGAGACTCTTGAAATTGCTCTCAACCTTAGCTGCAATTCTCTAAGTGGGCTAATACCAGCTCAGATTTCTGCTCTTAACAAGCTTTCTATTCTAGACCTTTCTCATAACCAGTTAGAGGGAGGTTTGAACCCACTTGCAGGGCTAGATAACCTTGTCTCTCTTAATATTTCCTACAACAAATTCACAGGATATCTTCCAGATAATAAGCTTTTCAGGCAGTTATCACCAAAAGACTTAACTGGAAATCAAGGGCTTTGCTCTTCAGGTCAGGACTCATGCTTTGCAAGTGATTCTAGCAAGACAGATCTGACTCTAAATGGAAGTGATGTGAGGAAGTCACGAAGGCTTAAAATAGCTATTGGTTTGCTAATGGTTTTAACAGTACTAATGACAGTTATGGGGATATATGCAGTGATAAAGGCACGAAGAACCATTAGAGATGATGATTCAGAGCTAGGGGACTCATGGCCATGGCAGTTCATTCCATTCCAGAAGCTAAACTTTTCAGTGGAGCAAGTGTTGAGATGTTTAATTGATGGAAACATAATTGGAAAAGGATGTTCTGGTGTTGTTTATCGTGCTGAAATGGATAATGGTGAGGTCATTGCTGTGAAGAAACTGTGGCCAACAACAATGGACGCTGTGGGAGAAGGATTTAAGGATGATAAAAGTGGAATTCGTGATTCATTCTCTGCTGAGGTGAAAACACTTGGCTCAATCCGTCATAAGAACATTGTTAGATTCCTAGGTTGTTGTTGGAACCGAAACACAAGGTTGCTGATATATGATTATATGCCTAATGGAAGTTTGAGTAGTCTACTTCATGAGAAGACAGGAAATTTTCTAGAATGGGAACTAAGGTACAGAATCCTGTTAGGGGCTGCAGAAGGTCTTGCATATCTGCATCATGACTGTGTCCCTCCCATAGTACATAGAGACATCAAAGCCATTAACATCCTCATTGGCCTTGAATTTGAGCCTTATATAGCAGACTTTGGCTTGGCTAAACTAGTTGATGATGGCGGTTTTGGTAGATCCTCCAATACAGTTGCTGGTTCTTATGGATACATTGCTCCAGAATATGGCTACATGATGAAGATTACCGAGAAGAGCGATGTTTACAGCTATGGAGTAGTGTTGCTGGAAGTCTTGACGGGTAAGCAACCGATTGATCCAACAATACCAGATGGCCAACATGTTGTTGATTGGGTGAGACAGAAAAGGGGAGTTGAAGTACTTGACCATACCTTACTGTCTAGACCAGAATCAGAGATAGAGGAAATGATGCAGGCATTAGGCATAGCCTTGTTGTGTGTAAATTCATCCCCAGATGAAAGGCCAACAATGAGAGATGTTGCAGCAATGCTCAAGGAGATCAAGCATGAAAGAGATCAGGAATTTGCAAAAGTTGAGGTGCTTCTAAAGGGATCACCTGTTGCAAATGATGCTCATGGGAATAAAAGCTCCAGTGGTGTTATGGCAACATCTTCATCATTACCAGTAATGCAACGCTTGTACCCAGAAAGCAATAACACAACCTTCTCTGTATCTTCACTCCTTCATTCCTCTTCTATCAGTGCCAAGTTGGGTTTCAAGTGA 3438 0.427 MPSSRQSFFISSSSSSSSSSSSLLCIILFHAAFLYGLAFSANHEAYVLFSWLHSSASPSPPSFSNWNILDSDPCNWTSITCSPQGFVTEINIQSIPLELPLPSNLSSLLYLQKLVISDANLTGTVPANIGDCSPLTAIDLSSNNLIGSIPASIGKLQNLESLSLNSNQLTGKIPLELSNCISLKTLALFDNQLGGAIPPVLGKLSKLEVLRAGGNKDIVGNIPEELGECSNLTVLGLADTGISGSLPASLGQLRKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGKLQKLEQLFLWQNGLVGAIPEEIGNCTSLRKIDLSLNSLSGTIPLSLGGLLEIEEFMISDNNVSGSIPSSLSNASFLQQLQVDTNQLSGLIPPELGRLSKLIVFFAWQNQLEGSIPFTLANCSNLQALDLSRNALTGSIPIGLFQLQNLTKLLLISNDISGSIPSEIGSCSSLIRLRLGNNRITGEIPKTIGSLKSLNFLDLSENRLSGQVPDEIGSCTELQMIDFSSNSLEGPLPDSLSALSALQVFDASSNKFSGHIPASLGRLVSLNKLILGTNLFSGSIPASLSLCSSLQLLDLSGNELTGSIPAELGHIETLEIALNLSCNSLSGLIPAQISALNKLSILDLSHNQLEGGLNPLAGLDNLVSLNISYNKFTGYLPDNKLFRQLSPKDLTGNQGLCSSGQDSCFASDSSKTDLTLNGSDVRKSRRLKIAIGLLMVLTVLMTVMGIYAVIKARRTIRDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLIDGNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTMDAVGEGFKDDKSGIRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLIYDYMPNGSLSSLLHEKTGNFLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKAINILIGLEFEPYIADFGLAKLVDDGGFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGVVLLEVLTGKQPIDPTIPDGQHVVDWVRQKRGVEVLDHTLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDVAAMLKEIKHERDQEFAKVEVLLKGSPVANDAHGNKSSSGVMATSSSLPVMQRLYPESNNTTFSVSSLLHSSSISAKLGFK 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1363 1145 PRINTS Leucine-rich repeat signature 496 509 - -
Glsi09g1363 1145 PRINTS Leucine-rich repeat signature 638 651 - -
Glsi09g1363 1145 Gene3D Transferase(Phosphotransferase) domain 1 878 1089 - -
Glsi09g1363 1145 SMART serkin_6 790 1073 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1363 1145 SUPERFAMILY L domain-like 52 409 - -
Glsi09g1363 1145 Pfam Leucine rich repeat N-terminal domain 42 82 IPR013210 -
Glsi09g1363 1145 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 878 1087 - -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 44 158 IPR032675 -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 439 533 IPR032675 -
Glsi09g1363 1145 SUPERFAMILY Protein kinase-like (PK-like) 768 1070 IPR011009 -
Glsi09g1363 1145 Pfam Protein kinase domain 793 1066 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1363 1145 FunFam Putative LRR receptor-like serine/threonine-protein kinase 619 704 - -
Glsi09g1363 1145 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 216 439 - -
Glsi09g1363 1145 Pfam Leucine rich repeat 111 169 IPR001611 GO:0005515
Glsi09g1363 1145 Pfam Leucine rich repeat 620 674 IPR001611 GO:0005515
Glsi09g1363 1145 ProSiteProfiles Leucine-rich repeat profile. 640 662 IPR001611 GO:0005515
Glsi09g1363 1145 ProSitePatterns Serine/Threonine protein kinases active-site signature. 922 934 IPR008271 GO:0004672|GO:0006468
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 163 244 IPR032675 -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 341 438 IPR032675 -
Glsi09g1363 1145 FunFam LRR receptor-like serine/threonine-protein kinase 539 614 - -
Glsi09g1363 1145 FunFam Nuclear pore complex protein NUP107 41 199 - -
Glsi09g1363 1145 ProSitePatterns Protein kinases ATP-binding region signature. 796 819 IPR017441 GO:0005524
Glsi09g1363 1145 ProSiteProfiles Protein kinase domain profile. 790 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi09g1363 1145 Gene3D Phosphorylase Kinase; domain 1 777 877 - -
Glsi09g1363 1145 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 773 877 - -
Glsi09g1363 1145 SUPERFAMILY RNI-like 366 680 - -
Glsi09g1363 1145 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 440 534 - -
Glsi09g1363 1145 SMART LRR_typ_2 661 686 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 589 613 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 493 517 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 541 565 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 421 445 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 156 180 IPR003591 -
Glsi09g1363 1145 SMART LRR_typ_2 301 325 IPR003591 -
Glsi09g1363 1145 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 314 1069 - -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 245 340 IPR032675 -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 534 618 IPR032675 -
Glsi09g1363 1145 Gene3D Ribonuclease Inhibitor 619 706 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1363 Glsi-ChrGlsi09 10018022 10021996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1363 38 1074 Receptor kinase-like Gene Family AT5G56040 49.144 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi09g1363 Pkinase 7.2e-42 CL0016