Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1355 ATGGAAAGCCAAAGTAGCAGTAACAGTAATGACAACGGCAACACCAACAACAAGTGGAGAGCTGAGGAAGCCATTGGTGGAAACGCAGAAGCTATTCAAGCTCTCAGAGAACTTATCATATTCCCACTTCATTACTCTTCCCAGGCTCGGAAGCTCGGTCTTAAATGGCCGCGAGGGCTGCTCCTATACGGTCCACCAGGAACTGGAAAGACAAGTTTGGTACGAGCAGTTGTTCAGGAATGTGGTGCACGCTTGACAATTATCAGTCCACATTCTGTTCATAGAGCACATGCCGGTGAAAGCGAGAGAATTCTCCGAGAGGCCTTTTTAGAGGCATCATCCCATGTAATTTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGATGCACTATGTCCTCGTCGTAACTCCAGAAGGGAGCAAGATGTTCGAGTTGCCTCCCAGCTCTTCACACTGATGGACTCAAACAAACCATCCTCTTCTACGCCGGGAGTTGTTGTGGTTGCATCAACTAACAGAGTGGATGCAATTGACCCTGCCCTAAGAAGGTCGGGACGTTTTGATGCTGAAATTGAAGTTACTGTCCCAAATGAAGAGGAGCGCTTTCAAATTCTTAAGCTGTATACGAAGAAAATTCCCTTGGATCCCAGTGTGGACTTAAAAATTATTGCTTCATCTTGCAATGGATATGTTGGGGCTGATTTGGAGGCCTTGTGTCGTGAGGCTACCATGTTTGCAGTTAAAAAATCCTCAAATGCAAATGAAGATGCTATTAATTTCAGTTTAACAATGGAAGATTGGAAGAATGCAAGATCTGTTGTTGGTCCAAGCATAACAAGAGGTGTTACTGTGGAAATTCCCAAAGTGACTTGGGATGACATTGGAGGATTAAAAGAATTAAAGAGAAAGCTCCAGCAAGCTATTGAATGGCCTATCAAGCATTCTTCAGCATTTTCAAGATTGGGAATATCACCTGTACGTGGAATTCTTCTGCATGGGCCTCCAGGATGTTCCAAAACAACCCTTGCCAAAGCAGCTGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAATTGTACTCAATGTATGTTGGAGAGGGGGAAGCTTTGCTCCGTAACACATTTCAGAGAGCACGCCTTGCGGCGCCCAGCATATTATTCTTTGATGAGGCTGATGTGGTAGCTGCAAAACGGGGTGATAGCTCAAGCAATAGCATTACAGTTGGAGAAAGGCTTTTATCCACTCTTCTGACTGAGATGGATGGCTTAGAAGAAGCCAAAGGAATTCTTGTTTTGGCAGCTACAAATCGCCCTTATGCAATTGATGCTGCACTTATGCGTCCTGGACGTTTTGATCTGGTTCTGTATGTTCCACCACCTGATGTGGAAGCTCGATACGAGATACTCCGTGTACACACACGGAACGTGAAAATAGGGAGTGATGTTGATCTCAGAAGACTAGCGGAAGACACTGAGCTCTTCACAGGTGCTGAACTGGAAGGTTTATGTAGGGAAGCTGGGATTGTAGCGCTAAGGGAAAACATATCCGCAACTGTTGTGTGGGATCGTCATTTCCAGACTGTGAAAAACTCTCTAAAGCCAGCATTAACAGAAGCAGAAATTGTTTCTTACTCATCTTTCATGAAGACCTCATCTTCAGTACCTTCTGGGCGTTTTGAAGTAAGTCCAAAATCTCAGAGGAAGAAGCACAAGTTGGGTCCTGTGTCTTTGGTTAAAATTGGTATTGCCAGCTGTATATTGCTTGCTGCTGCTAAGTACTTTTTCATGCATGATGGAGAAGAAACTGTCTGTGAACTGGCTATCACCTGA 1842 0.4452 MESQSSSNSNDNGNTNNKWRAEEAIGGNAEAIQALRELIIFPLHYSSQARKLGLKWPRGLLLYGPPGTGKTSLVRAVVQECGARLTIISPHSVHRAHAGESERILREAFLEASSHVILGKPSVIFIDEIDALCPRRNSRREQDVRVASQLFTLMDSNKPSSSTPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEEERFQILKLYTKKIPLDPSVDLKIIASSCNGYVGADLEALCREATMFAVKKSSNANEDAINFSLTMEDWKNARSVVGPSITRGVTVEIPKVTWDDIGGLKELKRKLQQAIEWPIKHSSAFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAELYSMYVGEGEALLRNTFQRARLAAPSILFFDEADVVAAKRGDSSSNSITVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDVEARYEILRVHTRNVKIGSDVDLRRLAEDTELFTGAELEGLCREAGIVALRENISATVVWDRHFQTVKNSLKPALTEAEIVSYSSFMKTSSSVPSGRFEVSPKSQRKKHKLGPVSLVKIGIASCILLAAAKYFFMHDGEETVCELAIT 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1355 613 CDD RecA-like_CDC48_NLV2_r1-like 24 194 - -
Glsi09g1355 613 FunFam Cell division control protein 48 homolog B 197 279 - -
Glsi09g1355 613 Gene3D - 197 279 - -
Glsi09g1355 613 Gene3D - 280 464 IPR027417 -
Glsi09g1355 613 SMART AAA_5 56 198 IPR003593 GO:0016887
Glsi09g1355 613 SMART AAA_5 326 465 IPR003593 GO:0016887
Glsi09g1355 613 PANTHER AAA-FAMILY ATPASE 13 555 - -
Glsi09g1355 613 Gene3D - 9 195 IPR027417 -
Glsi09g1355 613 Gene3D - 465 544 - -
Glsi09g1355 613 FunFam spermatogenesis-associated protein 5-like protein 1 464 550 - -
Glsi09g1355 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 277 IPR027417 -
Glsi09g1355 613 ProSitePatterns AAA-protein family signature. 433 451 IPR003960 GO:0005524|GO:0016887
Glsi09g1355 613 FunFam Cell division control protein 48 homolog B 17 195 - -
Glsi09g1355 613 Pfam ATPase family associated with various cellular activities (AAA) 330 462 IPR003959 GO:0005524|GO:0016887
Glsi09g1355 613 Pfam ATPase family associated with various cellular activities (AAA) 60 194 IPR003959 GO:0005524|GO:0016887
Glsi09g1355 613 CDD RecA-like_CDC48_r2-like 301 461 - -
Glsi09g1355 613 FunFam Cell division control protein 48-B-like protein 280 464 - -
Glsi09g1355 613 Pfam AAA+ lid domain 485 529 IPR041569 -
Glsi09g1355 613 Pfam AAA+ lid domain 218 256 IPR041569 -
Glsi09g1355 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 288 521 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1355 Glsi-ChrGlsi09 9964981 9971373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1355 261 551 Calmodulin-binding Proteins AT3G56690 45.361 7.10e-83 278