Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1350 ATGGAGAAAAAAGTCCTGTGCTTGCTTTCACATAGACGCTTCTCCTCCACGCCGGAGATTCCAACCCTTTACTCCTTCCTTCAACCATCTCTCTTTGCCCTGAAAAGGAACCCACCAGCTTCTCAAGAACCCACTAAGCTCCCAACTTCACCACCGCAATCCCTGACTCCTGACCAAATAACCACCCTACAAACCGCCCTTCATAAGTCTCTGATCACCAGCGATACAGATGAGGCATGGAAGTCTTTCAGGACTCTCACAAATAACTCAGCCTTCCCAAGTAAGTCAATGACCAATTCTCTCATTACCCACTTGTCCTCTCACGGGGACATTCACAATCTCAAAAGGTCTTTTGCCTCTGTAGTATATATTATAGAGAAGAACCCAAAAATATTAGAATTTGAAACAGTTCATACAATGCTTAATTCTATGAAAAGTGCCAATCTTGCCGCCCCTGCTTTTGCCCTCGTCAAATGCATGTTCAAGAACAGATTTTTCGTTCCATTTGGTGTTTGGGGCAATGCGCTTGTTGAAATTAGTCGGAAGAATGGTAACCTTGTTGCTTATTTACGTATCTTTGAAGAGAATTGTAGGATTGCTTTGGATGAGAAATTGGAATTCATGAAACCTGACCTGGCTGCTTGTAATGCAGCACTAGAAGGGTCTTGTCGTGACCTTGAATCTGTGAGCGATGCTCAAAAACTCGTTGAAACAATGTCACTTTTCGGTGTTAGACCAGATGAATCGAGTTTTGGATTTCTTGCTTATTTGTATGCACTGAAGGGACTAGAAGAAAAGATAAATGAGTTGAACTTTTTGATGGGTGGATTTGGTTTCTCAAACAAAAGAGAATTCTATTGTAATTTAATTAGTGGTTATGTTAAGTCAGACAATTTAGCATCGGTTGAGTCAACTATTCTCCGAAGTCTGAAAGATGAAGATGGAAACAGTCGGAATTTTGGGGAAGAAACTTACTCTGAAATAGTTGAGGGATATCTTCAGAAGGGAAACATCAAGGGATTAGCAAATTTAATTATCGAAGCTCAGAAGTTAGAGCCTTCAAATTCTACAGTTGATAAATCAATAGGTTATGGTATTGTTAGTGCATGTGTTAACAATGGATTATCAAACAAGGCACACAGCATTCTTGATGAAATGAATGCTTTAGGAGGCTCTGTGGGTCTTGGGGTCTATGTGCCAATCTTAAAGGCTTACTGCAAAGAAAATCGAACTGCTGAAGCTACTCAATTGGTCATGGAGATTAGTAGTTCGGGACTAAAATTGGATGTGGAAACCTATGATGCTCTGATAGAAGCATCCATGTCCAGCCAAGATTTTAAGTCAGCCTTTACTTTATTCAGGGATATGAGGGAGGCAAGGATTTCTGATTTGAAGGGGAGTTATCTAACTATAATGACAGGTTTGATGGAGAACAATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGAGAACCCTCGAGTTGAAGTAGGTACTCATGACTGGAATTCTATCATTCATGCTTTCTGTAAAGTTGGGAGACTAGAAGATGCAAGAAGGACATTCAGAAGGATGGTGTTCCTGCAATTTGAGCCAAATGATCAAACATATTTGTCCCTAATTAATGGGTATGTCTTGGCGGAGAAATATTTTAATGTTCTAATGTTGTGGAATGAGGTGAAGCGAAAGTTATCAACAGATGGACAGAAGGGGGTCAAATTTGACCACAATCTGGTTGACGCTTTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCCGTTATGCAAGTTGTGGAGAGATCTAATGAGATGAAGATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACTCATAAGAAACTCAAAGTGGCAAAGCTAAGAAGAAGAAACTTCAGAAAAATGGAAGCACTCGTCGCTTTTAAGAATTGGGCTGGCTTAAATGCATGA 1965 0.4041 MEKKVLCLLSHRRFSSTPEIPTLYSFLQPSLFALKRNPPASQEPTKLPTSPPQSLTPDQITTLQTALHKSLITSDTDEAWKSFRTLTNNSAFPSKSMTNSLITHLSSHGDIHNLKRSFASVVYIIEKNPKILEFETVHTMLNSMKSANLAAPAFALVKCMFKNRFFVPFGVWGNALVEISRKNGNLVAYLRIFEENCRIALDEKLEFMKPDLAACNAALEGSCRDLESVSDAQKLVETMSLFGVRPDESSFGFLAYLYALKGLEEKINELNFLMGGFGFSNKREFYCNLISGYVKSDNLASVESTILRSLKDEDGNSRNFGEETYSEIVEGYLQKGNIKGLANLIIEAQKLEPSNSTVDKSIGYGIVSACVNNGLSNKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEATQLVMEISSSGLKLDVETYDALIEASMSSQDFKSAFTLFRDMREARISDLKGSYLTIMTGLMENNRPELMAAFLDEVVENPRVEVGTHDWNSIIHAFCKVGRLEDARRTFRRMVFLQFEPNDQTYLSLINGYVLAEKYFNVLMLWNEVKRKLSTDGQKGVKFDHNLVDAFLYAMVKGGFFDAVMQVVERSNEMKIFVDKWRYKQAFMETHKKLKVAKLRRRNFRKMEALVAFKNWAGLNA 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1350 654 Pfam Pentatricopeptide repeat domain 417 462 IPR002885 -
Glsi09g1350 654 Gene3D Tetratricopeptide repeat domain 364 462 IPR011990 GO:0005515
Glsi09g1350 654 PANTHER BNAC05G43320D PROTEIN 11 653 - -
Glsi09g1350 654 NCBIfam pentatricopeptide repeat 504 535 IPR002885 -
Glsi09g1350 654 Pfam PPR repeat family 504 546 IPR002885 -
Glsi09g1350 654 MobiDBLite consensus disorder prediction 37 56 - -
Glsi09g1350 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 500 534 IPR002885 -
Glsi09g1350 654 Gene3D Tetratricopeptide repeat domain 62 363 IPR011990 GO:0005515
Glsi09g1350 654 Gene3D Tetratricopeptide repeat domain 463 622 IPR011990 GO:0005515
Glsi09g1350 654 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 463 IPR002885 -
Glsi09g1350 654 Pfam PPR repeat 367 388 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1350 185 565 Glycosyltransferase AT1G05670 22.912 2.68e-16 80.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1350 09 9933390 9935354 Glsi09g1350 09 9933390 9935354 ECH