Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1342 ATGGCGTCGCAAATGGCGATCCTTGCTCGGACACGGTCGCTGATCAAAACTCTTCATTCTAACTCCGCTAGCACATCCGTGAAGACCATTAGCACCTTCACTTTCCTCTCTCAGGAACCTCAACTCGCTGAGCCCACATCTACTCCTACTACCCCACTTCCACCCAACCCTGCCTCTGGTAGTCCTCTCTACAATGAGAACTGGCGCAGCCCTATTCCTGCTTCCTCCCAGTCAGTGGTCCCACAAGGGTTTCTTAGCCAATCACCCGGTAATCGCATCCGATCAATGTTTCAAACATATGATATTCAGAGCTTGATGAATGTCTTCGCTGATTGGATGGCCTCACAAAGATGGGATGAAGTAAAACAATTGTTCGAGTCTTGGATTATGTCGTTGGACAAGAATGGGAAGCCGAATATACCTGATGTGAATTTGTATAACCATTATCTGAGAGCAAACTTGATGATTGGTGCTTCTGCTGCAGACCTACTAGATCTGTTAGCTCAAATGGAGGAATTTGCGATCGCACCCAACACTGCTTCTTTTAATTTGGTGCTTAAAGCAATGTACCAGGCCAAGGAGACTGATGCTGCGCAGAAATTGCTGGAACGGATGCTGCTGACAGGAAATGAGTCTCGCCCTGATGATGAATCGTATAACTTGGTAATTGGAATGCTGTTTTTGACAGGCCAGATTGATGCTACGTTGAAATATATAGATTTGTCTTTGAAATCTAGTTATATGTTATCAACGAAGGTGTTTATGGACTGCGTGAATAGTTGTGTCAATAATGGCAGGCTAGATACTTTGGCGACAATAATTGAAAAGTGCAAGACAACAGATCAGAACAAAGCTCTTTGCCCCTCCTGGAACTTGTGCAATTTTTTAGCTGAAGTTGCAATGCAAGAGGATAATAGCAATCTAGCTTATTATTCCTTGGAGTTTATGGCTAAGTGGATTCAACGGGGTGAGCTGGCAAGACCTGCTGTATTGCTTTCTGTAGATGAAGGTTTAGTTGTGTCAGCTCTTGCAACTGCAGGTAGGACCTATAGTTCTAAACTGCTAGATGCAGCATGGGCTATTTTACGCCGCTCATTGCGTCAAACAAAAGCTCCTAACCCAGAATCTTATCTCGGAAAGATACATGCGCTTGCATCATTGGGGGACTTACAAAGGGCTTTTGGAACATTACATGACTTTGAGTCTGCTTATGGAGATTCCAGTCAAGAAACTGAAGAAATGTTCTCCCCTTTTACTTCTTTACATCCATTGGTTGTGGCGTGCTCCAAGAAGGGTTTTGAGACTTTGGATTCTGTTTACTTTCAACTGGAAAATTTAAGCCGTGCAGAGACTCCTTATAAATCTGTTGCTGCTCTAAACTGCATCATTTTAGGATGTGCAAATATATGGGACCTTGATCGTGCCTACCAAACTTTTGAAGCAATTGGATCCTCTTTTGGGCTGACGCCTGATATCCATTCATTCAATGCTCTAATGTATGCATTTGGGAAGGTCAAGAAGACACATGAAGCTTCTAGGGTGTTTGAGCACCTATTGAGTTTGGGTGTAAAGCCAAATGCAATGTCATATTCGCTGCTTGTGGATGCCCATCTCATAAACCGGGATATCAAAGCTGCTCTGGCTTTGATTGATGATATGGTTGCTGCTGGATTTGAACCAACAAAAGAGACACTAAAAAAGGTTAGAAGGCGATGCATGAGAGAGATGGACTATGACAGTGATGATCGAGTGCAGTCACTTGCTAAATCTCTGAATATTCGAATGGGTTCAGAAGTTCGTCGGGACATTCTTTTCAATCTTGAGTACAGCATGGATTATGCATAA 1845 0.4325 MASQMAILARTRSLIKTLHSNSASTSVKTISTFTFLSQEPQLAEPTSTPTTPLPPNPASGSPLYNENWRSPIPASSQSVVPQGFLSQSPGNRIRSMFQTYDIQSLMNVFADWMASQRWDEVKQLFESWIMSLDKNGKPNIPDVNLYNHYLRANLMIGASAADLLDLLAQMEEFAIAPNTASFNLVLKAMYQAKETDAAQKLLERMLLTGNESRPDDESYNLVIGMLFLTGQIDATLKYIDLSLKSSYMLSTKVFMDCVNSCVNNGRLDTLATIIEKCKTTDQNKALCPSWNLCNFLAEVAMQEDNSNLAYYSLEFMAKWIQRGELARPAVLLSVDEGLVVSALATAGRTYSSKLLDAAWAILRRSLRQTKAPNPESYLGKIHALASLGDLQRAFGTLHDFESAYGDSSQETEEMFSPFTSLHPLVVACSKKGFETLDSVYFQLENLSRAETPYKSVAALNCIILGCANIWDLDRAYQTFEAIGSSFGLTPDIHSFNALMYAFGKVKKTHEASRVFEHLLSLGVKPNAMSYSLLVDAHLINRDIKAALALIDDMVAAGFEPTKETLKKVRRRCMREMDYDSDDRVQSLAKSLNIRMGSEVRRDILFNLEYSMDYA 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1342 614 Gene3D Tetratricopeptide repeat domain 336 601 IPR011990 GO:0005515
Glsi09g1342 614 PANTHER OS07G0599000 PROTEIN 1 613 IPR044605 -
Glsi09g1342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Glsi09g1342 614 Gene3D Tetratricopeptide repeat domain 102 324 IPR011990 GO:0005515
Glsi09g1342 614 Pfam Pentatricopeptide repeat domain 141 189 IPR002885 -
Glsi09g1342 614 Pfam PPR repeat family 490 536 IPR002885 -
Glsi09g1342 614 MobiDBLite consensus disorder prediction 38 59 - -
Glsi09g1342 614 NCBIfam pentatricopeptide repeat 529 561 IPR002885 -
Glsi09g1342 614 NCBIfam pentatricopeptide repeat 494 527 IPR002885 -
Glsi09g1342 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1342 76 572 Glycosyltransferase AT1G05670 22.482 1.98e-11 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi09g1342 09 9887660 9891345 Glsi09g1342 09 9887660 9891345 ECH