Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi09g1332 ATGGAGGAGAGGAAGTTTGTGTGCAAGTATTGCAACAAGAAGTACCCTTGTGGGAAGTCTCTGGGTGGACACATCAGGACCCATATGACTGACCATTCAGCACAAGCTCAAGACAATAATGGAGAGAGAAGTAATAATGCTGATAAGGTCAAGTTCGATGCTGCTGGAAGAAAGAGGAAGAGAGATTTAGGGTCTGAGGATGATTCTGGGAACCCCATGTATGGCCTCAGAGAGAACCCCAAGAAGACAACGAGGTTTGTGCATTCCAACGCCACTTTACAAGAAGAGAAATTCTGCAAAGAATGCGGAAAAGGTTTTCTGTCTCTGAAAGCTCTCTGTGGTCACATGGCTTGCCACTCGGAAAAAGATAAGGGAACGAACAAGCTTGAGAATAATTCTGGGCTCTGTGAGAAGCAGAAATTGGTGATGGATAGTCAATCGGATACTGAGTCTTCTCCTCCAACGCATCAAAGTAGATCCAGAAGAATGAGGCTCAAGACCCTTAATAATAATCACCCTTCTTCTGTTCCTTTTGCAAATGGTTCTTCTTCTGTGTCAGAGGTAGAGCAGGAACAAGAAGAGGTCGCTAGGTGTTTGATGTTATTGTCCAAAGACTCTAGCCATAAGGCTCGTTTTGTTTTGCCTACTGAGTCTTCGGACAACAATTCGGTTGTTCTAGAGGCCAAATCTCCGTCTGCCGATACGAGAGTTACTTTCAATAATGGTACTAAAAACTCTGTCTCTAATGCTTATGAGCTTGTGAAGAAGAAGGTGCACAAGGACTTGAAGTTGAAGTCTGCTGAGATTGTTGCTTCTGATAATTCAGATTCTGGGTATTTCAGATATGGTCCCAAAAAAGTCGAATCAGATGTTTCAATTGATGGGTTTCTCAGGAATGATGAATTCAGGAAGCCGAAAGTTGAAGACAGGTCTGGGTTTGAGGACTATGATGCTGAATCGAGGAAGATGCTGAACAGAGGCAGAAGCAGAAACACAGAACCAAAGAAACCAGTTTTGAAGGATTTGGAGTATGATAGAACAGCTGGAGCTACAAGGAAGTTCAATTCGAGAAAGAGAGCAAACTATGATTCTCTTAGCCACAACAATTTAATTGGGGCTTCTTGCAAGAATGATGAAATCTATGAGAATGGTGGAAATGGCTCTTATGATTCAACATATGAGAGTGATGAAAGTAGCACAGACACTGATGCTTATCCTGCTCCGAAACCTCATAGCAGCAGCAAGGTCCTCCATGGAAAAAAGAGCAGCAAGACCAAGAAGAAATTGAAGTCAAAGAAAAGCAGAGAACATGAATGCCCAATCTGCTACAAAATTTTCAGGTCAGGTCAAGCCTTAGGAGGTCACAAAAGGTCCCATTTTGTTGGAGGTTCTAAAGAAAACGCTCTGGTAATCAGACAAGGTGATCCTGTTGTTCCATGCCTGATTGATCTCAATTTACCTGCTCCTATTGATGATTAG 1479 0.426 MEERKFVCKYCNKKYPCGKSLGGHIRTHMTDHSAQAQDNNGERSNNADKVKFDAAGRKRKRDLGSEDDSGNPMYGLRENPKKTTRFVHSNATLQEEKFCKECGKGFLSLKALCGHMACHSEKDKGTNKLENNSGLCEKQKLVMDSQSDTESSPPTHQSRSRRMRLKTLNNNHPSSVPFANGSSSVSEVEQEQEEVARCLMLLSKDSSHKARFVLPTESSDNNSVVLEAKSPSADTRVTFNNGTKNSVSNAYELVKKKVHKDLKLKSAEIVASDNSDSGYFRYGPKKVESDVSIDGFLRNDEFRKPKVEDRSGFEDYDAESRKMLNRGRSRNTEPKKPVLKDLEYDRTAGATRKFNSRKRANYDSLSHNNLIGASCKNDEIYENGGNGSYDSTYESDESSTDTDAYPAPKPHSSSKVLHGKKSSKTKKKLKSKKSREHECPICYKIFRSGQALGGHKRSHFVGGSKENALVIRQGDPVVPCLIDLNLPAPIDD 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi09g1332 492 MobiDBLite consensus disorder prediction 44 67 - -
Glsi09g1332 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 437 459 IPR013087 -
Glsi09g1332 492 SMART c2h2final6 6 28 IPR013087 -
Glsi09g1332 492 SMART c2h2final6 437 459 IPR013087 -
Glsi09g1332 492 SMART c2h2final6 97 119 IPR013087 -
Glsi09g1332 492 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Glsi09g1332 492 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 491 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 308 344 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 386 433 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 141 162 - -
Glsi09g1332 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 124 IPR013087 -
Glsi09g1332 492 Pfam C2H2-type zinc finger 6 29 - -
Glsi09g1332 492 Pfam C2H2-type zinc finger 99 121 - -
Glsi09g1332 492 Pfam C2H2-type zinc finger 437 459 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 141 158 - -
Glsi09g1332 492 SUPERFAMILY beta-beta-alpha zinc fingers 98 459 IPR036236 -
Glsi09g1332 492 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Glsi09g1332 492 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Glsi09g1332 492 ProSitePatterns Zinc finger C2H2 type domain signature. 439 459 IPR013087 -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 414 433 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 386 407 - -
Glsi09g1332 492 MobiDBLite consensus disorder prediction 33 82 - -
Glsi09g1332 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi09g1332 Glsi-ChrGlsi09 9806273 9807751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi09g1332 1 492 C2H2 Transcription Factor Family AT1G26610 41.188 3.60e-99 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi09g1332 zf-C2H2_6 3.6e-05 CL0361