LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi09g1329	ATGGAAGACAAAGACAGGGCATTATGGGATCCTGCGACTCTCACTGAGTTCACCAGCGAGTCCACCTGGACACTCGGACCTCATGACTCGGACGCTGCTTATACCGCCATACTCAGCGACTTCGGCTGGAGTCTTGAGCCGGAGCAACTCAACGCGATCGCCTTCGAGGAGGATAATAAGCGTAATTTGGCGGGAGCAGGAGGCTCGTGGCTCCCGGCCAAAGCGTCCGCGTCGAATAATCAATCAGTCTCATCGAGCTCCAGCGAGGATCCGCCGGAGAAGTCCACCGCCTCCGACGGGAAACAGCCCGAGACACAGAGTAAAAGCAAAAAGAAGGGGCAAAAGCGAATAAGGCAGCCACGGTTTGCATTCATGACCAAGACTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGCAAGTATGGTCAGAAGGCTGTCAAAAATAGTCCTTTTCCTAGGAGCTACTATCGTTGCACAAACAGCAAATGCACTGTGAAGAAAAGGGTGGAACGCTCTTCCCAGGACCCAACTATTGTTATTACTACATATGAAGGCCAACACTGTCACCATAGTACTGTTGGGTATCCTCGAGGTGGAATTGTTAGTCATGAACCCACTTTTGCCACCCAGTTAGCTCCTTCCATGTCTCATCAGTTCTTTTATTCAACTCAATTACCCATACAAAACTCTCTTAGTTTTTTTAAGCCTCATCAGGCACAGGATGAAGCTGTAGGATCATCCAGCACTGCCGCACTGCCAGACGCAACCCCCTTGCAGCCCTTTACAGATGAAGGACTACTTGGAGATATTGTGCCCCACAGGAATATGATTAACAGATGA	843	0.4982	MEDKDRALWDPATLTEFTSESTWTLGPHDSDAAYTAILSDFGWSLEPEQLNAIAFEEDNKRNLAGAGGSWLPAKASASNNQSVSSSSSEDPPEKSTASDGKQPETQSKSKKKGQKRIRQPRFAFMTKTEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSQDPTIVITTYEGQHCHHSTVGYPRGGIVSHEPTFATQLAPSMSHQFFYSTQLPIQNSLSFFKPHQAQDEAVGSSSTAALPDATPLQPFTDEGLLGDIVPHRNMINR	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi09g1329	280	SUPERFAMILY	WRKY DNA-binding domain	125	191	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi09g1329	280	Pfam	WRKY DNA -binding domain	134	190	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi09g1329	280	MobiDBLite	consensus disorder prediction	73	103	-	-
	Glsi09g1329	280	ProSiteProfiles	WRKY domain profile.	128	193	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi09g1329	280	SMART	WRKY_cls	133	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Glsi09g1329	280	FunFam	WRKY transcription factor 57	119	193	-	-
	Glsi09g1329	280	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	78	199	IPR044810	GO:0003700
	Glsi09g1329	280	Gene3D	WRKY domain	120	186	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Glsi09g1329	280	MobiDBLite	consensus disorder prediction	72	123	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi09g1329	Glsi-ChrGlsi09	9787514	9790120	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi09g1329	8	273	WRKY Transcription Factor Family	AT1G69310	48.454	6.69e-71	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Glsi09g1329		WRKY	2.4e-25	CL0274